Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AB2M34_RS13485 Genome accession   NZ_CP161903
Coordinates   2501434..2501883 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain DYJ24     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2496434..2506883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS13455 (AB2M34_13455) sepM 2496513..2497538 (-) 1026 WP_003245451.1 protease DdcP Regulator
  AB2M34_RS13460 (AB2M34_13460) ylbK 2497540..2498322 (-) 783 WP_003232221.1 patatin family protein -
  AB2M34_RS13465 (AB2M34_13465) spoVV 2498503..2499729 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  AB2M34_RS13470 (AB2M34_13470) coaD 2499740..2500225 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AB2M34_RS13475 (AB2M34_13475) rsmD 2500230..2500784 (-) 555 WP_047182572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB2M34_RS13480 (AB2M34_13480) ylbG 2501107..2501379 (-) 273 WP_069964462.1 YlbG family protein -
  AB2M34_RS13485 (AB2M34_13485) ylbF 2501434..2501883 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AB2M34_RS13490 (AB2M34_13490) ylbE 2501999..2502238 (-) 240 WP_003232231.1 YlbE-like family protein -
  AB2M34_RS13495 (AB2M34_13495) ylbD 2502254..2502652 (-) 399 WP_003232233.1 YlbD family protein -
  AB2M34_RS13500 (AB2M34_13500) ylbC 2502884..2503924 (-) 1041 WP_014479713.1 CAP domain-containing protein -
  AB2M34_RS13505 (AB2M34_13505) ylbB 2504008..2504454 (-) 447 WP_046160383.1 CBS domain-containing protein -
  AB2M34_RS13510 (AB2M34_13510) ylbA 2504594..2504956 (+) 363 WP_003232238.1 YugN family protein -
  AB2M34_RS13515 (AB2M34_13515) ctaG 2504988..2505881 (-) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  AB2M34_RS13520 (AB2M34_13520) ctaF 2505909..2506241 (-) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  AB2M34_RS13525 (AB2M34_13525) ctaE 2506244..2506867 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=919522 AB2M34_RS13485 WP_003221370.1 2501434..2501883(-) (ylbF) [Bacillus subtilis strain DYJ24]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=919522 AB2M34_RS13485 WP_003221370.1 2501434..2501883(-) (ylbF) [Bacillus subtilis strain DYJ24]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCTACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1