Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VA644_RS08875 Genome accession   NZ_CP141796
Coordinates   1775407..1777218 (+) Length   603 a.a.
NCBI ID   WP_049161077.1    Uniprot ID   -
Organism   Lactobacillus gasseri strain SYP-B4209     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770407..1782218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA644_RS08850 (VA644_08850) - 1770769..1771551 (-) 783 WP_195589456.1 threonine/serine exporter family protein -
  VA644_RS08855 (VA644_08855) - 1771574..1773121 (-) 1548 WP_003651262.1 ABC-F family ATP-binding cassette domain-containing protein -
  VA644_RS08860 (VA644_08860) - 1773130..1773522 (-) 393 WP_003649972.1 hypothetical protein -
  VA644_RS08865 (VA644_08865) - 1773745..1774014 (+) 270 WP_020807069.1 hypothetical protein -
  VA644_RS08870 (VA644_08870) - 1774119..1775243 (-) 1125 WP_003649969.1 LCP family protein -
  VA644_RS08875 (VA644_08875) pepF 1775407..1777218 (+) 1812 WP_049161077.1 oligoendopeptidase F Regulator
  VA644_RS08880 (VA644_08880) - 1777277..1778149 (-) 873 WP_049161079.1 Rpn family recombination-promoting nuclease/putative transposase -
  VA644_RS08885 (VA644_08885) - 1778293..1779804 (-) 1512 WP_195212503.1 L-lactate permease -
  VA644_RS08890 (VA644_08890) - 1779924..1780715 (-) 792 WP_003649965.1 metal ABC transporter permease -
  VA644_RS08895 (VA644_08895) - 1780715..1781374 (-) 660 WP_003649964.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69010.90 Da        Isoelectric Point: 4.6562

>NTDB_id=919521 VA644_RS08875 WP_049161077.1 1775407..1777218(+) (pepF) [Lactobacillus gasseri strain SYP-B4209]
MALPTRNEVSDDLKWDLSRVFKNDQEWEQEYKQVAQEIKNLSKFKGTLAKSGKDLYEGITAILAVNRRLEKVYVYATMSS
DVDTSNNHYLGFVAKAQSLANQMSAAIAFVDPEILSIPEETLAKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVALRKKILGLKDLQMYDMYVPLTGKPVLSYNFEEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVENQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAMEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTEQERDAYINFLKSGSSDY
PTEIMKRAGVDMTKADYLRDAFDTFEKRLNEFEKIVNELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=919521 VA644_RS08875 WP_049161077.1 1775407..1777218(+) (pepF) [Lactobacillus gasseri strain SYP-B4209]
ATGGCTCTTCCAACAAGAAATGAAGTATCCGATGATCTTAAGTGGGACTTAAGTCGTGTTTTTAAGAACGATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCACAAGAAATCAAGAACTTAAGTAAATTTAAGGGAACACTTGCCAAATCTGGTAAAG
ATCTTTACGAAGGAATTACAGCAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTACGCTACAATGTCAAGC
GATGTAGACACAAGCAATAATCATTACCTCGGTTTTGTTGCTAAAGCACAAAGCTTAGCTAATCAAATGAGTGCTGCAAT
TGCTTTTGTCGATCCTGAAATATTATCTATTCCAGAAGAAACCCTTGCTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTATCGACACCGCCTTGAACAGATTACGCAAAAACGTCCTCATACCTTGCCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGATGCAATGGGTACATCTGCTAATACCTTCAACGTCTTAACTAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGGCTATACTCACTTTTAATTCAATCTCAAGACCGCAACGTCCGTAAAA
ACGCCTTTGACGTGATGTATGCAAGCTACGGACAGTTTGAAAACAGTCTTGCTTCAACTTTATCAGGTGAGGTAAAAGCT
CACAATTTTAATGCTCGCGTACATAAATACAATTCGGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTACCAACAGCTGT
TTACGATACATTGATCAAGGAAGTAAATAGCCACCTTGACTTACTTCACCGTTACGTTGCATTAAGAAAGAAAATTCTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTCCCATTAACCGGGAAGCCAGTTCTTTCTTATAACTTTGAGGAAGCA
AAAGAAGAAGCAAGAAAGGCTCTAGCACCATTAGGAGAAGACTATTTAAAACACGTTGATTATATTTTTAATAACCGCGT
AATTGATGTGGTTGAAAATCAAAACAAGGTTACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTACACTCTAGTTCATGAAACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACTAATGAGAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGCGCATTTGTCTTAAACCATTATCTGGATTCGTTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCGGAATTTGAACAATTTATTCATGAAACTGATGCTAATGGTCAGCCGTTAACAGCT
GACGTACTCGATGAATTTTATGGCAACTTAAACCAAAGATACTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGTCACGTATTCCTCACTTCTACTACAACTTCTACGTTTACCAATACGCAACAGGTTTTGCAGCTGCAACTGCTC
TTGCTAATAAAGTTGTTCACGGCACTGAGCAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGCTCTTCAGATTAC
CCAACAGAAATTATGAAACGAGCTGGCGTTGATATGACTAAGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTAATGAATTAAACGCTGAAAAGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.946

98.01

0.509