Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   AB2M34_RS10170 Genome accession   NZ_CP161903
Coordinates   1894017..1895507 (+) Length   496 a.a.
NCBI ID   WP_014480148.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889017..1900507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS10150 (AB2M34_10150) serA 1889766..1891343 (-) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -
  AB2M34_RS10155 (AB2M34_10155) fmnP 1891840..1892412 (+) 573 WP_004399159.1 riboflavin transporter FmnP -
  AB2M34_RS10160 (AB2M34_10160) fdxA 1892452..1892700 (-) 249 WP_003225461.1 ferredoxin -
  AB2M34_RS10165 (AB2M34_10165) gmmB 1892966..1894024 (+) 1059 WP_129134464.1 helix-turn-helix domain-containing protein -
  AB2M34_RS10170 (AB2M34_10170) recS 1894017..1895507 (+) 1491 WP_014480148.1 ATP-dependent DNA helicase RecQ Machinery gene
  AB2M34_RS10175 (AB2M34_10175) ypbD 1895534..1896136 (+) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  AB2M34_RS10180 (AB2M34_10180) claE 1896087..1896818 (+) 732 WP_129134308.1 LysM peptidoglycan-binding domain-containing protein -
  AB2M34_RS10185 (AB2M34_10185) ypbF 1896881..1897324 (+) 444 WP_003230531.1 YpbF family protein -
  AB2M34_RS10190 (AB2M34_10190) ypbG 1897411..1898190 (+) 780 WP_014480146.1 metallophosphoesterase -
  AB2M34_RS10195 (AB2M34_10195) mecB 1898349..1898933 (+) 585 WP_003230533.1 genetic competence negative regulator -
  AB2M34_RS10200 (AB2M34_10200) gudB 1899089..1900363 (+) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56464.09 Da        Isoelectric Point: 6.5562

>NTDB_id=919501 AB2M34_RS10170 WP_014480148.1 1894017..1895507(+) (recS) [Bacillus subtilis strain DYJ24]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAVDTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYELKGARSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=919501 AB2M34_RS10170 WP_014480148.1 1894017..1895507(+) (recS) [Bacillus subtilis strain DYJ24]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTCCTAGAAAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTCGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACTAAAAGGGGCACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992