Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV36_RS01105 Genome accession   NZ_AP025483
Coordinates   243394..244398 (-) Length   334 a.a.
NCBI ID   WP_017073728.1    Uniprot ID   -
Organism   Vibrio echinoideorum strain DSM 107264     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 238394..249398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS01075 zapB 238533..238775 (+) 243 WP_017073734.1 cell division protein ZapB -
  OCV36_RS01080 rraA 238885..239400 (-) 516 WP_135457704.1 ribonuclease E activity regulator RraA -
  OCV36_RS01085 - 239474..240391 (-) 918 WP_017073732.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV36_RS01090 hslU 240547..241887 (-) 1341 WP_017073731.1 HslU--HslV peptidase ATPase subunit -
  OCV36_RS01095 hslV 241944..242492 (-) 549 WP_017073730.1 ATP-dependent protease subunit HslV -
  OCV36_RS01100 - 242738..243271 (-) 534 WP_029224883.1 SPOR domain-containing protein -
  OCV36_RS01105 cytR 243394..244398 (-) 1005 WP_017073728.1 DNA-binding transcriptional regulator CytR Regulator
  OCV36_RS01110 priA 244639..246840 (-) 2202 WP_135457706.1 primosomal protein N' -
  OCV36_RS01115 rpmE 247172..247390 (+) 219 WP_017073726.1 50S ribosomal protein L31 -
  OCV36_RS01120 - 247722..249011 (+) 1290 WP_135457708.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36479.04 Da        Isoelectric Point: 6.8459

>NTDB_id=91946 OCV36_RS01105 WP_017073728.1 243394..244398(-) (cytR) [Vibrio echinoideorum strain DSM 107264]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVEAAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPATATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=91946 OCV36_RS01105 WP_017073728.1 243394..244398(-) (cytR) [Vibrio echinoideorum strain DSM 107264]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACTGCAACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAACGAGTGGAAGCAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGC
ATCGAAGACGCCGCAGTAGAAAATGATTACCTCGTTCTACTTGGCGACAGTGGTCAACAAAAGAAACGTGAATCATCATT
TGTAAACTTAGTCTTCACCAAACAAGCTGATGGCATGTTGCTGCTTGGAACTGATCATCCATTTGATGTCAGCAAACCTG
AACAAAAAAATTTACCGCCAATGGTTATGGCCTGTGAATTTGCTCCTGAGCTTGAATTACCTACAGTACACATCGATAAC
CTAACCTCTGCATTTGAGGCGGTTAACTACCTAGCTCAATTAGGTCATAAGCGTATTGCTCAAATATCTGGGCCCGCGAC
TGCAACCCTGTGTAAGTTCCGTCAACAAGGTTACCAACAAGCCCTACGCCGCGCTGGAGTATCAATGAACCCTGCTTACA
GCACAGTGGGTGATTTTACCTTTGAAGCTGGTGCGAAAGCGGTTCGTCAATTATTGGCACTTCCAGAGCAACCAACCGCG
ATTTTCTGTCATAACGATGCGATGGCGATTGGTGCAATTCAAGAAGCGAAGAAGTTAGGCTTACGTGTTCCTCAAGATCT
ATCAATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACGACGATTTCTCAGCCTCGTTACG
AGATTGGACGTCAAGCCATGTTAATGATGCTTGATCTCCTTAAAGGTAACGATGTTCAAGCGGGTTCACGTCTGCTTGAA
GCTAAATTGGTGGTTCGAGGCAGTACTGCACCACCACGAATTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

90.06

99.401

0.895
  cytR Vibrio parahaemolyticus RIMD 2210633

88.288

99.701

0.88

Multiple sequence alignment