Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AB2M34_RS02390 Genome accession   NZ_CP161903
Coordinates   450733..451866 (+) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 445733..456866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS02360 (AB2M34_02360) ywmC 446542..447225 (+) 684 WP_041334706.1 VWA domain-containing protein -
  AB2M34_RS02365 (AB2M34_02365) - 447356..447496 (+) 141 WP_014481180.1 hypothetical protein -
  AB2M34_RS02370 (AB2M34_02370) ywmD 447549..448223 (+) 675 WP_041334709.1 VWA domain-containing protein -
  AB2M34_RS02375 (AB2M34_02375) - 448318..448479 (+) 162 WP_003227706.1 hypothetical protein -
  AB2M34_RS02380 (AB2M34_02380) fdhD 448712..449500 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  AB2M34_RS02385 (AB2M34_02385) moaA 449516..450541 (+) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  AB2M34_RS02390 (AB2M34_02390) rapC 450733..451866 (+) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  AB2M34_RS02395 (AB2M34_02395) - 452021..452500 (+) 480 WP_003244390.1 hypothetical protein -
  AB2M34_RS02400 (AB2M34_02400) csbD 452573..452761 (+) 189 WP_003227718.1 stress response protein CsbD -
  AB2M34_RS02405 (AB2M34_02405) - 452974..453142 (+) 169 Protein_476 urea ABC transporter substrate-binding protein -
  AB2M34_RS02410 (AB2M34_02410) - 453453..453611 (+) 159 WP_120363539.1 hypothetical protein -
  AB2M34_RS02415 (AB2M34_02415) ureA 453806..454123 (+) 318 WP_046160948.1 urease subunit gamma -
  AB2M34_RS02420 (AB2M34_02420) ureB 454120..454494 (+) 375 WP_014481169.1 urease subunit beta -
  AB2M34_RS02425 (AB2M34_02425) ureC 454491..456200 (+) 1710 WP_014481168.1 urease subunit alpha -
  AB2M34_RS02430 (AB2M34_02430) ywnA 456335..456736 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=919447 AB2M34_RS02390 WP_015251020.1 450733..451866(+) (rapC) [Bacillus subtilis strain DYJ24]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=919447 AB2M34_RS02390 WP_015251020.1 450733..451866(+) (rapC) [Bacillus subtilis strain DYJ24]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTAATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCACTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424