Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCW38_RS16350 Genome accession   NZ_AP025481
Coordinates   291341..292435 (+) Length   364 a.a.
NCBI ID   WP_010428642.1    Uniprot ID   A0AAN0LXX0
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 286341..297435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS16320 - 287783..288019 (-) 237 WP_010428622.1 hypothetical protein -
  OCW38_RS16325 - 288189..288815 (-) 627 WP_065612688.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCW38_RS16330 - 289288..289602 (-) 315 WP_004730049.1 DUF496 family protein -
  OCW38_RS16335 - 289798..289998 (+) 201 WP_016769134.1 hypothetical protein -
  OCW38_RS16340 - 290063..290719 (+) 657 WP_010428637.1 YceH family protein -
  OCW38_RS16345 - 290720..291034 (+) 315 WP_010428640.1 GIY-YIG nuclease family protein -
  OCW38_RS16350 luxP 291341..292435 (+) 1095 WP_010428642.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCW38_RS16355 luxQ 292435..295002 (+) 2568 WP_016769136.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCW38_RS16360 - 295121..295780 (-) 660 WP_010428648.1 PilZ domain-containing protein -
  OCW38_RS16365 - 295975..296325 (+) 351 WP_010428650.1 HopJ type III effector protein -
  OCW38_RS16370 - 296413..296721 (-) 309 WP_080573667.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41365.75 Da        Isoelectric Point: 6.0023

>NTDB_id=91941 OCW38_RS16350 WP_010428642.1 291341..292435(+) (luxP) [Vibrio cyclitrophicus strain LMG 21359]
MKRLLMLFGLAVFSASALSHGTRVLNGYWEYQDYLAKFPEQKALTDKMVEAVQNHPVPLKRAQDRPITISVVYPGQQISD
YWVRNIQAFEKRLDRLRINYQINQVFTRVNADISQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLADYFKQVTPPNSKYSVLYRSEGYISDARGDTFIHDVNTDTNFDLKSSFYTKSD
KESGYQAAKISIANNKDLDFIYACATDVALGAVEAIRESRKDILINGWGGGSAELEAIERGDLDVTVMRMNDDTGIAMAE
AIKWDLAGLEVPTVYSGEFEVVTKEDSPERISELKKRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=91941 OCW38_RS16350 WP_010428642.1 291341..292435(+) (luxP) [Vibrio cyclitrophicus strain LMG 21359]
ATGAAACGTTTATTGATGTTGTTTGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCACGGTACCCGTGTCCTCAATGG
GTATTGGGAATACCAGGATTATCTTGCTAAATTTCCAGAACAAAAAGCGCTGACGGATAAGATGGTCGAAGCTGTACAAA
ACCACCCCGTGCCATTAAAGCGAGCTCAAGATAGACCGATCACAATTTCTGTTGTTTACCCTGGCCAACAGATCTCCGAT
TATTGGGTCCGAAATATCCAAGCCTTTGAGAAACGTCTCGACAGGTTAAGAATTAATTACCAAATAAACCAAGTGTTTAC
TCGTGTCAATGCGGATATATCTCAGCAGAGTATTTCTTTGCAAGAGGCGATTGAAAACAAGACGGATTACTTAATTTTTA
CGCTAGATACAACTCGACACCGTAAATTTATTGAGCATGTATTGAGCTCTACGGATACCAAGTTGATCCTGCAAAACATC
ACCACTCCAGTACGTGCGTGGGCAGACAGGCAGCCATTTATGTATGTGGGTTTTGACCATGCAACAGGCAGCTTGAAGTT
GGCGGACTATTTTAAACAAGTGACACCTCCTAACAGTAAGTACTCGGTTCTATATCGTTCAGAGGGCTACATTAGTGATG
CTCGTGGCGATACCTTTATCCATGATGTAAACACAGATACTAATTTTGATCTCAAGTCTTCTTTCTACACTAAATCAGAT
AAGGAAAGTGGTTACCAGGCAGCTAAAATCAGCATTGCGAACAATAAGGATCTAGACTTTATCTATGCATGTGCAACTGA
TGTCGCTCTAGGTGCTGTAGAAGCGATTCGTGAGTCGCGTAAAGATATCTTAATTAATGGCTGGGGAGGCGGTTCTGCTG
AACTTGAAGCGATTGAGAGAGGTGACTTAGATGTTACTGTCATGCGAATGAATGACGATACGGGTATTGCGATGGCAGAA
GCTATCAAATGGGACCTTGCTGGGTTGGAAGTTCCTACCGTTTATTCTGGTGAGTTCGAAGTTGTCACCAAAGAAGACTC
TCCAGAACGTATTTCAGAACTTAAGAAGCGTGCATTTAGGTACTCAGGCCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.934

100

0.643

Multiple sequence alignment