Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   VA243_RS00725 Genome accession   NZ_CP141774
Coordinates   140876..141280 (+) Length   134 a.a.
NCBI ID   WP_324714751.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07353     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 135876..146280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA243_RS00690 - 136049..136987 (-) 939 WP_324714746.1 tetraacyldisaccharide 4'-kinase -
  VA243_RS00695 - 136984..137766 (-) 783 WP_324714747.1 NAD+ synthase -
  VA243_RS00705 ilvC 138015..139007 (+) 993 WP_324714748.1 ketol-acid reductoisomerase -
  VA243_RS00710 minD 139031..139837 (+) 807 WP_324714749.1 septum site-determining protein MinD -
  VA243_RS00715 minE 139834..140067 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  VA243_RS00720 dprA 140079..140879 (+) 801 WP_324714750.1 DNA-processing protein DprA Machinery gene
  VA243_RS00725 dprB 140876..141280 (+) 405 WP_324714751.1 Holliday junction resolvase RuvX Machinery gene
  VA243_RS00730 - 141409..141771 (+) 363 WP_324714752.1 tetratricopeptide repeat protein -
  VA243_RS00735 - 141960..142298 (+) 339 WP_024421725.1 hypothetical protein -
  VA243_RS00740 - 142282..142842 (+) 561 WP_154408480.1 hypothetical protein -
  VA243_RS00745 - 142853..143185 (+) 333 WP_324714753.1 glycoside hydrolase family protein -
  VA243_RS00750 - 143588..143785 (+) 198 WP_001869324.1 hypothetical protein -
  VA243_RS00755 - 143871..144257 (+) 387 WP_324714754.1 DUF1294 domain-containing protein -
  VA243_RS00760 - 144257..145042 (+) 786 WP_324714755.1 hypothetical protein -
  VA243_RS00765 - 145032..146132 (+) 1101 WP_324714756.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15308.91 Da        Isoelectric Point: 9.1882

>NTDB_id=919400 VA243_RS00725 WP_324714751.1 140876..141280(+) (dprB) [Helicobacter pylori strain P07353]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCRQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=919400 VA243_RS00725 WP_324714751.1 140876..141280(+) (dprB) [Helicobacter pylori strain P07353]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAATGCGCGCATTGAATATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCGGCAGGTTTTAAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94