Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   VA210_RS05740 Genome accession   NZ_CP141773
Coordinates   1182170..1183483 (-) Length   437 a.a.
NCBI ID   WP_324713490.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08205     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1177170..1188483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA210_RS05710 nadC 1177633..1178454 (-) 822 WP_324713487.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VA210_RS05715 nadA 1178454..1179464 (-) 1011 WP_324713488.1 quinolinate synthase NadA -
  VA210_RS05720 - 1179454..1180257 (-) 804 WP_000561098.1 phosphatidylserine decarboxylase -
  VA210_RS05725 - 1180254..1180757 (-) 504 WP_000953079.1 DUF6115 domain-containing protein -
  VA210_RS05730 - 1180770..1181264 (-) 495 WP_164869461.1 hypothetical protein -
  VA210_RS05735 mqnP 1181257..1182141 (-) 885 WP_324713489.1 menaquinone biosynthesis prenyltransferase MqnP -
  VA210_RS05740 comEC/comE3 1182170..1183483 (-) 1314 WP_324713490.1 ComEC/Rec2 family competence protein Machinery gene
  VA210_RS05745 - 1183480..1184946 (-) 1467 WP_324713491.1 replicative DNA helicase -
  VA210_RS05750 - 1184957..1186357 (-) 1401 WP_324713492.1 NAD(P)H-hydrate dehydratase -
  VA210_RS05755 crdS 1186360..1187562 (-) 1203 WP_324714201.1 copper-sensing histidine kinase CrdS -
  VA210_RS05760 crdR 1187528..1188169 (-) 642 WP_024774021.1 copper response regulator transcription factor CrdR -
  VA210_RS05765 - 1188257..1188481 (-) 225 Protein_1133 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50166.11 Da        Isoelectric Point: 9.8515

>NTDB_id=919390 VA210_RS05740 WP_324713490.1 1182170..1183483(-) (comEC/comE3) [Helicobacter pylori strain P08205]
MKDKTFQGAFELLSTPKEYLLCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKFQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLMFIVFFPLSLILHAMGLGSLLDPILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPGSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=919390 VA210_RS05740 WP_324713490.1 1182170..1183483(-) (comEC/comE3) [Helicobacter pylori strain P08205]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATTGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGTTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGTGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCTTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATGTTTATCGTGTTTTTCCCTTTGAGTTTAATCTTGCATGCTATGGGTTTGGGGTCTTTGTTAGATCCTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTGGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945