Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   VA211_RS07195 Genome accession   NZ_CP141771
Coordinates   1478988..1479269 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain P08204     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473988..1484269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA211_RS07175 - 1474699..1476039 (-) 1341 WP_195833433.1 COG3014 family protein -
  VA211_RS07185 comB4 1476359..1478722 (-) 2364 WP_324685069.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  VA211_RS07190 comB3 1478725..1478988 (-) 264 WP_029650115.1 hypothetical protein Machinery gene
  VA211_RS07195 comB2 1478988..1479269 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  VA211_RS07200 - 1479414..1480241 (-) 828 WP_324685072.1 DUF5718 family protein -
  VA211_RS07205 - 1480332..1481384 (-) 1053 WP_324685074.1 MnmA/TRMU family protein -
  VA211_RS07210 dnaG 1481381..1483060 (-) 1680 WP_324685076.1 DNA primase -
  VA211_RS07215 groES 1483333..1483689 (+) 357 WP_324685078.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=919376 VA211_RS07195 WP_001272686.1 1478988..1479269(-) (comB2) [Helicobacter pylori strain P08204]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=919376 VA211_RS07195 WP_001272686.1 1478988..1479269(-) (comB2) [Helicobacter pylori strain P08204]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989