Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   VA211_RS07190 Genome accession   NZ_CP141771
Coordinates   1478725..1478988 (-) Length   87 a.a.
NCBI ID   WP_029650115.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08204     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473725..1483988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA211_RS07175 - 1474699..1476039 (-) 1341 WP_195833433.1 COG3014 family protein -
  VA211_RS07185 comB4 1476359..1478722 (-) 2364 WP_324685069.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  VA211_RS07190 comB3 1478725..1478988 (-) 264 WP_029650115.1 hypothetical protein Machinery gene
  VA211_RS07195 comB2 1478988..1479269 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  VA211_RS07200 - 1479414..1480241 (-) 828 WP_324685072.1 DUF5718 family protein -
  VA211_RS07205 - 1480332..1481384 (-) 1053 WP_324685074.1 MnmA/TRMU family protein -
  VA211_RS07210 dnaG 1481381..1483060 (-) 1680 WP_324685076.1 DNA primase -
  VA211_RS07215 groES 1483333..1483689 (+) 357 WP_324685078.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.13 Da        Isoelectric Point: 9.5741

>NTDB_id=919375 VA211_RS07190 WP_029650115.1 1478725..1478988(-) (comB3) [Helicobacter pylori strain P08204]
MIILSASVRNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=919375 VA211_RS07190 WP_029650115.1 1478725..1478988(-) (comB3) [Helicobacter pylori strain P08204]
ATGATTATCCTGTCAGCGAGCGTGAGGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTCGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966