Detailed information NTG0919362

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: VA211_RS02405
• Genome accession: NZ_CP141771
• Coordinates: 480871..482070 (-)
• Length: 399 a.a.
• NCBI ID: WP_324685906.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P08204
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 475871..487070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA211_RS02380	-	475891..476409 (-)	519	WP_324685896.1	replication regulatory RepB family protein	-
VA211_RS02385	-	476406..477350 (-)	945	WP_324685898.1	ATPase, T2SS/T4P/T4SS family	-
VA211_RS02390	-	477355..477627 (-)	273	WP_001917649.1	hypothetical protein	-
VA211_RS02395	-	477645..478622 (-)	978	WP_324685902.1	hypothetical protein	-
VA211_RS02400	-	478635..480887 (-)	2253	WP_324685904.1	collagen-like protein	-
VA211_RS02405	comB10	480871..482070 (-)	1200	WP_324685906.1	DNA type IV secretion system protein ComB10	Machinery gene
VA211_RS02410	-	482067..483725 (-)	1659	WP_324685908.1	TrbG/VirB9 family P-type conjugative transfer protein	-
VA211_RS02415	-	483722..484893 (-)	1172	Protein_463	VirB8/TrbF family protein	-
VA211_RS02420	-	484886..485020 (-)	135	WP_050835664.1	hypothetical protein	-
VA211_RS02425	-	485017..485867 (-)	851	Protein_465	transporter	-
VA211_RS02430	-	485954..486607 (+)	654	WP_324686360.1	IS607-like element IS607 family transposase	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44620.33 Da
• Isoelectric Point: 10.0240

>NTDB_id=919362 VA211_RS02405 WP_324685906.1 480871..482070(-) (comB10) [Helicobacter pylori strain P08204]
MKQSLLKKIGLGVGGFGVLMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQALQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=919362 VA211_RS02405 WP_324685906.1 480871..482070(-) (comB10) [Helicobacter pylori strain P08204]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGGTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAGGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGCTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAATTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.69	98.496	0.529