Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | VA211_RS00270 | Genome accession | NZ_CP141771 |
| Coordinates | 59550..60125 (+) | Length | 191 a.a. |
| NCBI ID | WP_324685297.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain P08204 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 54550..65125
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VA211_RS00245 | uvrD | 55241..57286 (+) | 2046 | WP_324685287.1 | DNA helicase UvrD | - |
| VA211_RS00250 | flgA | 57283..57939 (+) | 657 | WP_220837781.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| VA211_RS00255 | - | 57949..58512 (+) | 564 | WP_324685291.1 | UbiX family flavin prenyltransferase | - |
| VA211_RS00260 | coaD | 58512..58985 (+) | 474 | WP_015642253.1 | pantetheine-phosphate adenylyltransferase | - |
| VA211_RS00265 | tmk | 58987..59562 (+) | 576 | WP_324685295.1 | dTMP kinase | - |
| VA211_RS00270 | comFC | 59550..60125 (+) | 576 | WP_324685297.1 | ComF family protein | Machinery gene |
| VA211_RS00275 | - | 60158..60358 (+) | 201 | Protein_53 | hypothetical protein | - |
| VA211_RS00280 | - | 60404..62443 (+) | 2040 | WP_324685301.1 | class I SAM-dependent DNA methyltransferase | - |
| VA211_RS00285 | - | 62440..63653 (+) | 1214 | Protein_55 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21309.91 Da Isoelectric Point: 9.0940
>NTDB_id=919355 VA211_RS00270 WP_324685297.1 59550..60125(+) (comFC) [Helicobacter pylori strain P08204]
MRCLTCLKLSFKPLCSNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVIILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFVIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVIILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFVIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=919355 VA211_RS00270 WP_324685297.1 59550..60125(+) (comFC) [Helicobacter pylori strain P08204]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATCTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGATAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGCTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGTAATCGCACTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATCTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGATAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGCTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGTAATCGCACTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
93.717 |
100 |
0.937 |