Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB2M35_RS06650 Genome accession   NZ_CP161902
Coordinates   1295024..1296853 (+) Length   609 a.a.
NCBI ID   WP_173401378.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ22     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290024..1301853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS06615 (AB2M35_06615) yjbC 1290696..1291274 (+) 579 Protein_1239 GNAT family N-acetyltransferase -
  AB2M35_RS06620 (AB2M35_06620) spx 1291455..1291850 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  AB2M35_RS06625 (AB2M35_06625) yjbE 1291893..1292549 (-) 657 WP_014479447.1 TerC family protein -
  AB2M35_RS06630 (AB2M35_06630) - 1292719..1292859 (+) 141 WP_119122854.1 hypothetical protein -
  AB2M35_RS06635 (AB2M35_06635) mecA 1292826..1293482 (+) 657 WP_014479448.1 adaptor protein MecA Regulator
  AB2M35_RS06640 (AB2M35_06640) - 1293477..1293599 (-) 123 WP_003245684.1 hypothetical protein -
  AB2M35_RS06645 (AB2M35_06645) coiA 1293673..1294794 (+) 1122 WP_235091746.1 competence protein CoiA Machinery gene
  AB2M35_RS06650 (AB2M35_06650) pepF 1295024..1296853 (+) 1830 WP_173401378.1 oligoendopeptidase F Regulator
  AB2M35_RS06655 (AB2M35_06655) - 1296891..1297058 (-) 168 WP_003244944.1 hypothetical protein -
  AB2M35_RS06660 (AB2M35_06660) spxH 1297373..1298272 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  AB2M35_RS06665 (AB2M35_06665) bhbI 1298269..1298667 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  AB2M35_RS06670 (AB2M35_06670) cwlQ 1298922..1299656 (-) 735 WP_014479451.1 bifunctional muramidase/murein lytic transglycosylase -
  AB2M35_RS06675 (AB2M35_06675) yjbK 1299671..1300243 (-) 573 WP_014479452.1 CYTH domain-containing protein -
  AB2M35_RS06680 (AB2M35_06680) - 1300368..1300736 (+) 369 WP_041850975.1 hypothetical protein -
  AB2M35_RS06685 (AB2M35_06685) yjbM 1300765..1301400 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70100.02 Da        Isoelectric Point: 5.2218

>NTDB_id=919335 AB2M35_RS06650 WP_173401378.1 1295024..1296853(+) (pepF) [Bacillus subtilis strain DYJ22]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTKVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=919335 AB2M35_RS06650 WP_173401378.1 1295024..1296853(+) (pepF) [Bacillus subtilis strain DYJ22]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCTGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCACTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
AACGTTTCCATCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTTGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATATGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATCTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAAGGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.99

97.537

0.478