Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AB2M35_RS02490 Genome accession   NZ_CP161902
Coordinates   513523..513957 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain DYJ22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 508523..518957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS02460 (AB2M35_02460) ydaD 509170..510030 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  AB2M35_RS02465 (AB2M35_02465) lyxE 510046..510549 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AB2M35_RS02470 (AB2M35_02470) ydaF 510637..511188 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  AB2M35_RS02475 (AB2M35_02475) ydaG 511266..511688 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB2M35_RS02480 (AB2M35_02480) amj 512194..513003 (+) 810 WP_069837262.1 lipid II flippase Amj -
  AB2M35_RS02485 (AB2M35_02485) ydzA 513048..513338 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  AB2M35_RS02490 (AB2M35_02490) lrpC 513523..513957 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AB2M35_RS02495 (AB2M35_02495) topB 514022..516205 (+) 2184 WP_069837263.1 DNA topoisomerase III -
  AB2M35_RS02500 (AB2M35_02500) mutT 516318..516767 (+) 450 WP_046160069.1 8-oxo-dGTP diphosphatase MutT -
  AB2M35_RS02505 (AB2M35_02505) poxB 516834..518558 (+) 1725 WP_046160070.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=919306 AB2M35_RS02490 WP_003246585.1 513523..513957(+) (lrpC) [Bacillus subtilis strain DYJ22]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=919306 AB2M35_RS02490 WP_003246585.1 513523..513957(+) (lrpC) [Bacillus subtilis strain DYJ22]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1