Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   VA613_RS02140 Genome accession   NZ_CP141769
Coordinates   455363..456370 (-) Length   335 a.a.
NCBI ID   WP_407702861.1    Uniprot ID   -
Organism   Thiobacillus sedimenti strain SCUT-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450363..461370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA613_RS02125 (VA613_02125) - 452236..453597 (-) 1362 WP_324780223.1 sigma 54-interacting transcriptional regulator -
  VA613_RS02130 (VA613_02130) ftsX 453780..454691 (-) 912 WP_324780224.1 permease-like cell division protein FtsX -
  VA613_RS02135 (VA613_02135) ftsE 454688..455350 (-) 663 WP_324780225.1 cell division ATP-binding protein FtsE -
  VA613_RS02140 (VA613_02140) pilA 455363..456370 (-) 1008 WP_407702861.1 signal recognition particle-docking protein FtsY Machinery gene
  VA613_RS02145 (VA613_02145) - 456485..457825 (+) 1341 WP_324781207.1 pitrilysin family protein -
  VA613_RS02150 (VA613_02150) - 457815..459122 (+) 1308 WP_324780227.1 pitrilysin family protein -
  VA613_RS02155 (VA613_02155) rsmD 459112..459687 (+) 576 WP_324780228.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VA613_RS02160 (VA613_02160) coaD 459691..460173 (+) 483 WP_324780229.1 pantetheine-phosphate adenylyltransferase -
  VA613_RS02165 (VA613_02165) - 460192..460443 (+) 252 WP_324780230.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 35742.19 Da        Isoelectric Point: 6.8931

>NTDB_id=919296 VA613_RS02140 WP_407702861.1 455363..456370(-) (pilA) [Thiobacillus sedimenti strain SCUT-2]
MFSFFKSKPPAAEVPAAAPPAEPAAQPTAEPRLSWAQRLKQGLAKTRDRLGGQLSSLFGVGRKIDAELFEELETILITAD
VGVDATHALLDTLQKKVRRDNLTEAADLQAALKQALIDLLTPLQAPLDVTPHKPFILMLAGVNGAGKTTTIGKLAKLYQS
QGLSVLLAAGDTFRAAAREQLQVWGERNNVTVVSQEKGDSAAVIYDAIQAARARNIDVVLADTAGRLPTQLHLMEEIKKV
KRVIEKAIPGAPHEVLLVLDANTGQNAVNQVKAFDDALGVTGLALTKLDGTAKGGAIAAIAQARPIPVRYIGVGETMDDL
RPFDAREFVEAIFSV

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=919296 VA613_RS02140 WP_407702861.1 455363..456370(-) (pilA) [Thiobacillus sedimenti strain SCUT-2]
GTGTTTAGTTTCTTCAAATCCAAACCGCCTGCCGCCGAGGTGCCTGCCGCAGCGCCGCCGGCCGAGCCCGCGGCCCAGCC
GACCGCCGAGCCGCGCCTGAGCTGGGCGCAGCGCCTCAAGCAGGGGCTCGCCAAGACGCGCGACCGGCTCGGCGGCCAGC
TGTCGAGCCTGTTCGGCGTCGGCCGCAAGATCGATGCCGAGCTCTTCGAAGAGCTTGAAACGATCCTCATCACCGCGGAC
GTAGGCGTCGACGCGACCCATGCCCTGCTCGACACCCTGCAGAAGAAGGTGCGGCGCGACAACCTCACCGAGGCGGCCGA
CCTGCAGGCCGCACTGAAGCAGGCGCTGATCGATCTGCTGACACCGCTGCAGGCCCCGCTCGACGTCACCCCGCACAAGC
CCTTCATCCTGATGCTGGCCGGCGTCAACGGCGCCGGCAAGACCACGACCATCGGCAAGCTCGCCAAGCTCTACCAGTCG
CAGGGCCTGTCGGTGCTGCTGGCGGCCGGCGACACCTTCCGCGCGGCGGCGCGCGAGCAGCTGCAGGTCTGGGGCGAGCG
CAACAACGTCACGGTAGTGAGCCAGGAGAAGGGCGACTCGGCGGCGGTGATCTACGATGCCATCCAGGCCGCGCGCGCCC
GCAACATCGACGTCGTGCTGGCCGATACGGCCGGCCGGCTGCCGACCCAGCTGCACCTCATGGAAGAGATCAAGAAGGTC
AAGCGGGTGATCGAGAAGGCCATCCCCGGCGCACCGCACGAAGTGCTGCTGGTGCTCGACGCCAACACCGGACAGAACGC
GGTGAACCAGGTCAAGGCCTTCGACGACGCGCTCGGCGTGACCGGGCTCGCGCTGACCAAGCTGGATGGCACCGCCAAGG
GCGGCGCGATCGCCGCCATCGCCCAGGCCCGGCCGATCCCCGTGCGCTACATCGGCGTCGGCGAGACCATGGACGACCTC
AGGCCGTTCGATGCGCGCGAGTTCGTCGAGGCCATCTTTTCCGTCTAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(135-333)

SRP54-type protein, helical bundle domain (SRP54_N)

(50-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

65.846

97.015

0.639