Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCW38_RS08405 Genome accession   NZ_AP025480
Coordinates   1928937..1930118 (+) Length   393 a.a.
NCBI ID   WP_016788746.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1923937..1935118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS08385 - 1924002..1925021 (+) 1020 WP_010441249.1 GTP-binding protein -
  OCW38_RS08390 - 1925150..1926082 (-) 933 WP_102370783.1 aspartoacylase -
  OCW38_RS08395 - 1926330..1927226 (-) 897 WP_261893709.1 EamA family transporter -
  OCW38_RS08400 - 1927331..1928728 (+) 1398 WP_016793554.1 PLP-dependent aminotransferase family protein -
  OCW38_RS08405 cqsA 1928937..1930118 (+) 1182 WP_016788746.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCW38_RS08410 - 1930240..1932288 (-) 2049 WP_261893712.1 response regulator -
  OCW38_RS08415 - 1932697..1933827 (+) 1131 WP_261875708.1 ISAs1 family transposase -
  OCW38_RS08420 - 1933961..1934176 (-) 216 WP_016784527.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43763.71 Da        Isoelectric Point: 6.1431

>NTDB_id=91927 OCW38_RS08405 WP_016788746.1 1928937..1930118(+) (cqsA) [Vibrio cyclitrophicus strain LMG 21359]
MSDKSKNKPLPSFIEERLNFYIQDLITQNESQKHLVLGSHPSHDAVVMQSNDYLSLSHNEQIQKAHRDAISQHDDNVVMS
AIFLQDEQSKPAFETDLANFMGMESCLLSQSGWAANIGLLQTICPPNMPVYIDFFAHMSLWEGIRAAGATGHPFMHNNMN
HLRKQIQRYGSGVIVVDSVYSTIGTVAPLRDIYEMAQEFDCALVVDESHSLGTHGSNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKASDDKRDTLFKRAKALTTGLKRIGFNIRSESQ
IVALECGSESNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSINADMTPRDIDHVLTACQEAFNHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=91927 OCW38_RS08405 WP_016788746.1 1928937..1930118(+) (cqsA) [Vibrio cyclitrophicus strain LMG 21359]
ATGAGTGATAAATCTAAAAACAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGATCTCATTAC
ACAAAACGAAAGCCAAAAACATTTGGTATTGGGGAGTCACCCCAGCCATGACGCAGTGGTAATGCAAAGCAACGATTACC
TATCTTTGTCGCACAATGAACAAATCCAGAAAGCACATCGGGACGCAATTTCACAACACGATGACAATGTGGTGATGTCT
GCCATCTTCTTACAAGATGAACAGTCGAAACCTGCATTTGAAACCGATCTGGCTAACTTTATGGGAATGGAAAGCTGCTT
GCTCTCTCAATCAGGTTGGGCGGCTAACATTGGCTTATTGCAAACGATCTGCCCTCCTAATATGCCTGTGTATATCGATT
TTTTTGCACACATGTCCCTATGGGAGGGTATTCGTGCCGCTGGTGCAACTGGCCACCCATTTATGCACAACAACATGAAT
CACCTTCGTAAACAGATTCAGCGTTATGGTTCGGGTGTGATTGTAGTCGACTCGGTTTACAGCACCATAGGTACGGTAGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCCTTGGTCGTCGATGAATCCCATTCACTAGGCACTC
ATGGTTCAAATGGTGCTGGTTTGGTTCAGGCATTAGGGCTGACTAACAAAGTGGATTTCATTACCGTCAGCTTGGCCAAA
ACCTTTGCCTATCGCGCTGGCGCTATACTCGGCCCTAAGCGATTATCGGAGACATTACCCTTTGTCGCTTACCCTGCTAT
TTTTAGCTCGACCGTACTACCACAAGAAGTTATCCGCTTAGAAAAGACTTTAGAGGTTATTAAAGCCTCTGATGATAAGC
GAGACACCTTGTTCAAACGCGCTAAAGCACTGACTACAGGGCTAAAGCGAATCGGTTTTAACATTCGCAGTGAATCTCAG
ATTGTGGCATTAGAATGTGGCAGTGAAAGCAACACTGAGCGTGTACGTGACTTCTTAGAAGAGCGTGACGTGTTTGGTGC
GGTATTTTGTCGGCCAGCAACAGGAAGAAACAAAAACATCATCCGCTTTTCGATTAACGCAGACATGACGCCGCGGGACA
TCGACCATGTTCTCACAGCATGCCAAGAGGCTTTTAATCACCCTGATTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547

Multiple sequence alignment