Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCW38_RS02680 Genome accession   NZ_AP025480
Coordinates   548487..549005 (+) Length   172 a.a.
NCBI ID   WP_010435876.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 543487..554005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS02670 gshA 546233..547801 (+) 1569 WP_010435871.1 glutamate--cysteine ligase -
  OCW38_RS02675 - 547812..548462 (+) 651 WP_010435873.1 hypothetical protein -
  OCW38_RS02680 luxS 548487..549005 (+) 519 WP_010435876.1 S-ribosylhomocysteine lyase Regulator
  OCW38_RS02685 - 549144..550415 (-) 1272 WP_010435880.1 HlyC/CorC family transporter -
  OCW38_RS02690 - 550543..551337 (-) 795 WP_010435882.1 inner membrane protein YpjD -
  OCW38_RS02695 ffh 551538..552932 (+) 1395 WP_010435884.1 signal recognition particle protein -
  OCW38_RS02700 rpsP 553145..553393 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCW38_RS02705 rimM 553418..553972 (+) 555 WP_016768202.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18980.67 Da        Isoelectric Point: 4.4901

>NTDB_id=91915 OCW38_RS02680 WP_010435876.1 548487..549005(+) (luxS) [Vibrio cyclitrophicus strain LMG 21359]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIISAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91915 OCW38_RS02680 WP_010435876.1 548487..549005(+) (luxS) [Vibrio cyclitrophicus strain LMG 21359]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCAGCCGTTCGTGTTGCTAAAACAATGCAAAC
CCCGAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ACACGCTTGAGCACTTATATGCTGGATTCATGCGTAATCAACTGAACGGTTCAGATGTAGAGATTATCGACATTTCACCG
ATGGGTTGTCGTACTGGTTTCTACATGAGCCTAATTGGTACACCTACAGAGCAACAGGTAGCGGACGGCTGGTTGGCAGC
AATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAAATTCCTGAGTTGAACGAATACCAATGTGGTACTGCGGCAATGC
ATTCTTTGGATGAAGCGAAAGAGATTGCCAATGCGATCATCTCAGCTGGTATCTCTGTAAACAAAAATGACGAACTGGCG
TTGCCAGAGTCTATGCTACAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment