Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ABXJ20_RS20190 Genome accession   NZ_CP161803
Coordinates   4146981..4147973 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain Z135-5     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4141981..4152973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ20_RS20165 (ABXJ20_20165) rbsD 4142105..4142524 (+) 420 WP_001296586.1 D-ribose pyranase -
  ABXJ20_RS20170 (ABXJ20_20170) rbsA 4142532..4144037 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ABXJ20_RS20175 (ABXJ20_20175) rbsC 4144042..4145007 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ABXJ20_RS20180 (ABXJ20_20180) rbsB 4145032..4145922 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ABXJ20_RS20185 (ABXJ20_20185) rbsK 4146048..4146977 (+) 930 WP_001545694.1 ribokinase -
  ABXJ20_RS20190 (ABXJ20_20190) cytR 4146981..4147973 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ABXJ20_RS20195 (ABXJ20_20195) mdtD 4147939..4149366 (-) 1428 WP_001280867.1 multidrug transporter subunit MdtD -
  ABXJ20_RS20200 (ABXJ20_20200) yieP 4149389..4150081 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=919101 ABXJ20_RS20190 WP_000224470.1 4146981..4147973(+) (cytR) [Escherichia coli strain Z135-5]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=919101 ABXJ20_RS20190 WP_000224470.1 4146981..4147973(+) (cytR) [Escherichia coli strain Z135-5]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364