Detailed information NTG0919076

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABXJ20_RS14390
• Genome accession: NZ_CP161803
• Coordinates: 2942644..2943636 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Z135-5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2937644..2948636

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXJ20_RS14370 (ABXJ20_14370)	ygbM	2938282..2939058 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
ABXJ20_RS14375 (ABXJ20_14375)	ygbN	2939147..2940511 (+)	1365	WP_000104433.1	GntP family transporter	-
ABXJ20_RS14380 (ABXJ20_14380)	-	2940654..2941697 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ABXJ20_RS14385 (ABXJ20_14385)	-	2941922..2942473 (+)	552	WP_001179444.1	flavodoxin family protein	-
ABXJ20_RS14390 (ABXJ20_14390)	rpoS	2942644..2943636 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABXJ20_RS14395 (ABXJ20_14395)	nlpD	2943699..2944793 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ABXJ20_RS14400 (ABXJ20_14400)	pcm	2944978..2945604 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABXJ20_RS14405 (ABXJ20_14405)	surE	2945598..2946359 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABXJ20_RS14410 (ABXJ20_14410)	truD	2946340..2947389 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ABXJ20_RS14415 (ABXJ20_14415)	ispF	2947386..2947865 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABXJ20_RS14420 (ABXJ20_14420)	ispD	2947865..2948575 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=919076 ABXJ20_RS14390 WP_000081550.1 2942644..2943636(-) (rpoS) [Escherichia coli strain Z135-5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=919076 ABXJ20_RS14390 WP_000081550.1 2942644..2943636(-) (rpoS) [Escherichia coli strain Z135-5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715