Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VNN51_RS06055 | Genome accession | NZ_CP141727 |
| Coordinates | 1205285..1207531 (+) | Length | 748 a.a. |
| NCBI ID | WP_252175351.1 | Uniprot ID | - |
| Organism | Lactococcus formosensis strain M20011502 FF20a2 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1200285..1212531
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNN51_RS06040 (VNN51_06040) | dnaG | 1201763..1203649 (+) | 1887 | WP_253009050.1 | DNA primase | - |
| VNN51_RS06045 (VNN51_06045) | - | 1203685..1203828 (+) | 144 | Protein_1135 | translation initiation factor IF-2 N-terminal domain-containing protein | - |
| VNN51_RS06050 (VNN51_06050) | rpoD | 1203943..1205067 (+) | 1125 | WP_306723678.1 | RNA polymerase sigma factor RpoD | - |
| VNN51_RS06055 (VNN51_06055) | clpC | 1205285..1207531 (+) | 2247 | WP_252175351.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VNN51_RS06060 (VNN51_06060) | yqeK | 1207586..1208173 (+) | 588 | WP_017370259.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK | - |
| VNN51_RS06065 (VNN51_06065) | def | 1208546..1209172 (-) | 627 | WP_017370260.1 | peptide deformylase | - |
| VNN51_RS06070 (VNN51_06070) | - | 1209277..1209732 (+) | 456 | WP_252175350.1 | RNA pyrophosphohydrolase | - |
| VNN51_RS06075 (VNN51_06075) | uvrB | 1209729..1211717 (+) | 1989 | WP_061414792.1 | excinuclease ABC subunit UvrB | - |
| VNN51_RS06080 (VNN51_06080) | fabZ | 1211744..1212202 (-) | 459 | WP_003134189.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
Sequence
Protein
Download Length: 748 a.a. Molecular weight: 83458.41 Da Isoelectric Point: 4.7203
>NTDB_id=919048 VNN51_RS06055 WP_252175351.1 1205285..1207531(+) (clpC) [Lactococcus formosensis strain M20011502 FF20a2]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGSQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGDGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNTQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEDEEK
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGSQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGDGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNTQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEDEEK
Nucleotide
Download Length: 2247 bp
>NTDB_id=919048 VNN51_RS06055 WP_252175351.1 1205285..1207531(+) (clpC) [Lactococcus formosensis strain M20011502 FF20a2]
ATGCTCTGCCAAAATTGTAAAATAAATGAAGCGACAATTCACCTTTATACGAATGTGAATGGACAACGTAAGCAAGTGGA
TTTATGCCAAAATTGCTATCAAATTATGAAATCAGGAGGTCAAGAAAGTTTGTTTGCTGGGGCGACAAATATTTCTAATA
ATGATGACCCATTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGACGGACAATGACACCTCCA
ACACAAGCTGGAGGTCGAGGTCCAGGAGGTCCACAAAACCCTCGTGGAAGTCAAGCACCTAAAGGACTTCTTGAAGAATT
CGGAGTCAACATTACTGATGCTGCACGTCGTGGAGAAATAGATCCTGTTATTGGGCGAGATTCTGAAATTACACGTGTTA
TCGAAATTTTGAATCGTCGAACAAAAAATAATCCTGTTCTTATCGGTGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGCTTAGCCCAAAAAATAGTTGATGGTGATGTACCACAAAAACTACAAAATAAAGAAGTTATACGTCTCGATGTTGTTAG
CCTTGTCCAAGGTACTGGTGTACGTGGGCAATTTGAAGAGCGTATGCAAAAGCTGATGGAAGAGATTCGTAAACGCGATG
ACGTTATCCTCTTCATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCAGCAGGTGATGGCAATATGGATGCTGGAAAT
ATCCTTAAACCGGCTTTAGCGCGTGGAGAACTACAACTTGTTGGGGCAACAACACTCAATGAATATAGAATTATCGAAAA
AGACGCGGCACTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCCTCTGTAGATGAGACCATCACGATTTTACGTG
GGATTCAAAAACGCTATGAAGACTATCATCATGTGAAATATTCAGATGAAGCAATCTTAGCTGCGGCGAATCTCTCGAAC
CGTTATATACAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTACTGGATGAAGCGGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGATATCAAGAAACGTATTGAGCAAGCAGAAGTACAAAAAAATGAAGCAATGCAACGTGAGG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGGGAGCTTCAAAGTCATGAAATCTCAGATACAGAT
ATGCCAAATATCACAGAAAAAGATATAGAAGCAATAGTTGAAGAAAAAACACATATTCCTGTGGGTGATCTGAAAGAAAA
AGAGCAAACACAGCTGATCAATTTGGCCGAGGACTTGAAAGAACATGTTATTGGACAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCACGTGTCGGACTTGGAAAACCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTGGGTAAGACTGAACTCGCTAAACAATTAGCTTATGAGCTCTTTGGCTCAAGAGATAGTATGATCCGCTTTGATAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCGCCTCCAGGATATGTAGGGTACGAGGAAGCAGGTC
AGCTGACAGAACGTGTCCGCCGTAACCCGTACAGCTTAATTTTATTGGATGAGATTGAGAAAGCACACCCTGATGTAATG
CATATGTTCTTGCAGATTCTTGATGACGGGCGTTTGACAGATGCGCAAGGGCGCACAGTTTCCTTCAAAGATGCAATCAT
CATTATGACCTCAAATGCGGGGACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGCGCTGCACGTGAAGGTCGTACGAATT
CAGTGCTTGGGGAACTCGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTCAATACTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGACCTAGGTTATGATCCGAAAATGGGAGCACGTCCATTGCGTCGTA
CCATCCAAGATAATATCGAGGACGCTATTGCAGATTTTTACATTGAGCATCCTGAGTATAAAGAATTACTTGCAGATTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAGGACACAGCGGATACATCTGATAATGAAGATGAAGA
GAAATAA
ATGCTCTGCCAAAATTGTAAAATAAATGAAGCGACAATTCACCTTTATACGAATGTGAATGGACAACGTAAGCAAGTGGA
TTTATGCCAAAATTGCTATCAAATTATGAAATCAGGAGGTCAAGAAAGTTTGTTTGCTGGGGCGACAAATATTTCTAATA
ATGATGACCCATTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGACGGACAATGACACCTCCA
ACACAAGCTGGAGGTCGAGGTCCAGGAGGTCCACAAAACCCTCGTGGAAGTCAAGCACCTAAAGGACTTCTTGAAGAATT
CGGAGTCAACATTACTGATGCTGCACGTCGTGGAGAAATAGATCCTGTTATTGGGCGAGATTCTGAAATTACACGTGTTA
TCGAAATTTTGAATCGTCGAACAAAAAATAATCCTGTTCTTATCGGTGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGCTTAGCCCAAAAAATAGTTGATGGTGATGTACCACAAAAACTACAAAATAAAGAAGTTATACGTCTCGATGTTGTTAG
CCTTGTCCAAGGTACTGGTGTACGTGGGCAATTTGAAGAGCGTATGCAAAAGCTGATGGAAGAGATTCGTAAACGCGATG
ACGTTATCCTCTTCATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCAGCAGGTGATGGCAATATGGATGCTGGAAAT
ATCCTTAAACCGGCTTTAGCGCGTGGAGAACTACAACTTGTTGGGGCAACAACACTCAATGAATATAGAATTATCGAAAA
AGACGCGGCACTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCCTCTGTAGATGAGACCATCACGATTTTACGTG
GGATTCAAAAACGCTATGAAGACTATCATCATGTGAAATATTCAGATGAAGCAATCTTAGCTGCGGCGAATCTCTCGAAC
CGTTATATACAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTACTGGATGAAGCGGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGATATCAAGAAACGTATTGAGCAAGCAGAAGTACAAAAAAATGAAGCAATGCAACGTGAGG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGGGAGCTTCAAAGTCATGAAATCTCAGATACAGAT
ATGCCAAATATCACAGAAAAAGATATAGAAGCAATAGTTGAAGAAAAAACACATATTCCTGTGGGTGATCTGAAAGAAAA
AGAGCAAACACAGCTGATCAATTTGGCCGAGGACTTGAAAGAACATGTTATTGGACAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCACGTGTCGGACTTGGAAAACCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTGGGTAAGACTGAACTCGCTAAACAATTAGCTTATGAGCTCTTTGGCTCAAGAGATAGTATGATCCGCTTTGATAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCGCCTCCAGGATATGTAGGGTACGAGGAAGCAGGTC
AGCTGACAGAACGTGTCCGCCGTAACCCGTACAGCTTAATTTTATTGGATGAGATTGAGAAAGCACACCCTGATGTAATG
CATATGTTCTTGCAGATTCTTGATGACGGGCGTTTGACAGATGCGCAAGGGCGCACAGTTTCCTTCAAAGATGCAATCAT
CATTATGACCTCAAATGCGGGGACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGCGCTGCACGTGAAGGTCGTACGAATT
CAGTGCTTGGGGAACTCGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTCAATACTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGACCTAGGTTATGATCCGAAAATGGGAGCACGTCCATTGCGTCGTA
CCATCCAAGATAATATCGAGGACGCTATTGCAGATTTTTACATTGAGCATCCTGAGTATAAAGAATTACTTGCAGATTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAGGACACAGCGGATACATCTGATAATGAAGATGAAGA
GAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
86.631 |
100 |
0.866 |
| clpE | Streptococcus mutans UA159 |
77.675 |
100 |
0.786 |
| clpE | Streptococcus pneumoniae TIGR4 |
77.839 |
97.727 |
0.761 |
| clpE | Streptococcus pneumoniae Rx1 |
77.839 |
97.727 |
0.761 |
| clpE | Streptococcus pneumoniae D39 |
77.839 |
97.727 |
0.761 |
| clpE | Streptococcus pneumoniae R6 |
77.839 |
97.727 |
0.761 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50.367 |
91.043 |
0.459 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.961 |
81.952 |
0.393 |
| clpC | Streptococcus pneumoniae Rx1 |
47.097 |
82.888 |
0.39 |
| clpC | Streptococcus pneumoniae D39 |
47.097 |
82.888 |
0.39 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.935 |
82.888 |
0.389 |
| clpC | Streptococcus mutans UA159 |
46.688 |
82.754 |
0.386 |
| clpC | Streptococcus thermophilus LMD-9 |
46.006 |
83.69 |
0.385 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.645 |
82.888 |
0.378 |