Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCW38_RS01135 Genome accession   NZ_AP025480
Coordinates   250625..251629 (-) Length   334 a.a.
NCBI ID   WP_261894819.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 245625..256629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS01105 zapB 245795..246037 (+) 243 WP_010435362.1 cell division protein ZapB -
  OCW38_RS01110 rraA 246144..246662 (-) 519 WP_010435359.1 ribonuclease E activity regulator RraA -
  OCW38_RS01115 - 246736..247653 (-) 918 WP_261894816.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCW38_RS01120 hslU 247809..249149 (-) 1341 WP_016767976.1 HslU--HslV peptidase ATPase subunit -
  OCW38_RS01125 hslV 249208..249756 (-) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  OCW38_RS01130 - 249963..250502 (-) 540 WP_010435351.1 SPOR domain-containing protein -
  OCW38_RS01135 cytR 250625..251629 (-) 1005 WP_261894819.1 DNA-binding transcriptional regulator CytR Regulator
  OCW38_RS01140 priA 251870..254071 (-) 2202 WP_261894821.1 primosomal protein N' -
  OCW38_RS01145 rpmE 254403..254621 (+) 219 WP_004737142.1 50S ribosomal protein L31 -
  OCW38_RS01150 - 254953..256242 (+) 1290 WP_261894824.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36473.04 Da        Isoelectric Point: 6.4911

>NTDB_id=91904 OCW38_RS01135 WP_261894819.1 250625..251629(-) (cytR) [Vibrio cyclitrophicus strain LMG 21359]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVEAAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPISATLCKLRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=91904 OCW38_RS01135 WP_261894819.1 250625..251629(-) (cytR) [Vibrio cyclitrophicus strain LMG 21359]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCAACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCTGTTTCTACTCGTAAGCGAGTCGAAGCGGCAGTGCTAGAAGCTGGATACTCACCCAACACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTATTTTGCTGAAATCATTCGTGGT
ATCGAAGACGCCGCAGTAGAAAATGATTACCTTGTTCTACTGGGTGATAGCGGCCAGCAAAAGAAGCGCGAGTCTTCTTT
TGTTAACTTGGTTTTCACCAAGCAAGCTGACGGTATGCTGCTGCTTGGCACTGACCATCCGTTTGATGTCAGCAAGCCTG
AACAAAAGAATTTACCGCCGATGGTGATGGCATGTGAATTCGCCCCTGAGCTCGAATTACCGACAGTACACATCGATAAC
TTAACCTCTGCATTTGAAGCGGTTAACTACCTAGCCCAATTAGGTCATAAGCGTATCGCTCAAATATCTGGCCCAATATC
AGCGACACTGTGTAAACTCCGCCAACAAGGCTACCAACAAGCATTGCGCCGTGCGGGTGTATCAATGAACCCAGCTTATA
GCACGGTCGGTGACTTTACCTTTGAAGCTGGTGCTCAAGCGGTTCGTCAACTTCTAGCTCTGCCCGAGCAACCTACTGCT
ATTTTCTGTCATAACGATGCAATGGCGATTGGTGCGATTCAAGAAGCGAAGAAGCTAGGTTTACGCGTCCCTCAAGATTT
ATCAATTGTTGGCTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCACTGACAACAATTTCTCAGCCTCGTTACG
AGATTGGACGTCAAGCCATGCTAATGATGCTTGATCTCCTTAAAGGTAACGATGTTCAAGCTGGTTCACGTCTGCTTGAA
GCTAAACTCGTGGTTCGAGGCAGTACTGCACCACCGCGAATTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.458

99.401

0.889
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.701

0.871

Multiple sequence alignment