Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VNN51_RS04195 Genome accession   NZ_CP141727
Coordinates   848791..849834 (+) Length   347 a.a.
NCBI ID   WP_017369505.1    Uniprot ID   A0A9X4SGW0
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 843791..854834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS04180 (VNN51_04180) - 846321..847667 (+) 1347 WP_253008938.1 glucose-6-phosphate isomerase -
  VNN51_RS04185 (VNN51_04185) rsmD 847775..848314 (+) 540 WP_017369507.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VNN51_RS04190 (VNN51_04190) coaD 848304..848801 (+) 498 WP_017369506.1 pantetheine-phosphate adenylyltransferase -
  VNN51_RS04195 (VNN51_04195) sepM 848791..849834 (+) 1044 WP_017369505.1 SepM family pheromone-processing serine protease Regulator
  VNN51_RS04200 (VNN51_04200) adhE 849866..852559 (-) 2694 WP_279360879.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  VNN51_RS04205 (VNN51_04205) - 852714..853754 (-) 1041 WP_017369503.1 lactonase family protein -
  VNN51_RS04210 (VNN51_04210) rpsB 854029..854802 (+) 774 WP_003133158.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37765.96 Da        Isoelectric Point: 6.5059

>NTDB_id=919039 VNN51_RS04195 WP_017369505.1 848791..849834(+) (sepM) [Lactococcus formosensis strain M20011502 FF20a2]
MKNEKIKKHKKLKLFFAVALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNQQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGRTFKSSTEMIDYVSQQKVGDSVTINYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPEVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNSDMKIVPVKTIQDAIDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=919039 VNN51_RS04195 WP_017369505.1 848791..849834(+) (sepM) [Lactococcus formosensis strain M20011502 FF20a2]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCGTCGCGCTACCGCTTCTTATTGTAGTGGG
GTTGTTCTTCCCCTTACCTTACTATATCGAGCAACCAGGAGGAACGATTCCAGTTAACCAAATGGTTGATGTCGCCGGGA
AAAAAGATGAGCATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGTGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCTACTGTTGTGAGTAGTGAAGAGATGACAGGCGGGATGACCAACCAGCAATTTGATTTGGTTAA
TCAGTTCTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTAGCAGGGAAGCCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCGACATTTAAAAATGACTTACAACTTTCGGATACGATAACAGCA
GTTAATGGTCGTACTTTCAAATCTTCAACTGAAATGATTGACTATGTGTCTCAACAAAAAGTTGGGGATAGCGTTACTAT
CAATTATACACGCGTAGATGGCAGTAATCATGAAGCCACAGGGAAGTATATTAAGCTGAGTAATGGTAAGACCGGAATTG
GTATTGGTTTAGTAGACCACACACAAGTTGTGACAGACCCTGAAGTTAAAATTGATGCCGGAAGTATTGGCGGACCGAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGTAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACTATCAATGAGGATGGCAGCATCGGGCAAATAGGTGGCGTCGATAAAAAAGTTGCTACAGCAAGTAATGCGGGTG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATTCAGATATGAAAATCGTACCTGTAAAGACGATTCAAGATGCAATAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(231-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.415

100

0.484