Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VNN51_RS02610 Genome accession   NZ_CP141727
Coordinates   542847..544208 (-) Length   453 a.a.
NCBI ID   WP_035001005.1    Uniprot ID   A0A9Q9D7X8
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 537847..549208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS02585 (VNN51_02585) - 538511..539005 (+) 495 WP_017368775.1 GNAT family N-acetyltransferase -
  VNN51_RS02590 (VNN51_02590) ald 539036..540157 (-) 1122 WP_017368774.1 alanine dehydrogenase -
  VNN51_RS02595 (VNN51_02595) - 540356..540862 (-) 507 WP_279359060.1 PepSY domain-containing protein -
  VNN51_RS02600 (VNN51_02600) - 540998..541627 (-) 630 WP_213432247.1 pyridoxamine 5'-phosphate oxidase family protein -
  VNN51_RS02605 (VNN51_02605) - 541636..542712 (-) 1077 WP_017368771.1 PIN/TRAM domain-containing protein -
  VNN51_RS02610 (VNN51_02610) radA 542847..544208 (-) 1362 WP_035001005.1 DNA repair protein RadA Machinery gene
  VNN51_RS02620 (VNN51_02620) - 544660..545667 (-) 1008 WP_279360558.1 site-specific integrase -
  VNN51_RS02625 (VNN51_02625) - 545754..546434 (+) 681 WP_013646119.1 IS6-like element IS1216 family transposase -
  VNN51_RS02630 (VNN51_02630) - 546765..547124 (+) 360 WP_002405438.1 helix-turn-helix domain-containing protein -
  VNN51_RS02635 (VNN51_02635) - 547638..547805 (-) 168 WP_005228365.1 cysteine-rich KTR domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49730.94 Da        Isoelectric Point: 5.1662

>NTDB_id=919028 VNN51_RS02610 WP_035001005.1 542847..544208(-) (radA) [Lactococcus formosensis strain M20011502 FF20a2]
MAKKKSTFLCQECGYKSVKKLGRCPNCGAWGSFVEEVEVQEVKNQRVSMTGEHSKPMKLDQVELFDTPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDTDFYLYAETNMQSIRNEVE
RLQPDFLIVDSIQTIMTPEIQSTQGSVSQVREVTGELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
QNTFRILRAVKNRFGSTNEIGIFEMQGSGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEEPTDARDCFIGEIGLTGEIR
RVTRMEQRLNEASKLGFQKVYAPKNSLAGVNTPENLKVVGVTTLSECLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=919028 VNN51_RS02610 WP_035001005.1 542847..544208(-) (radA) [Lactococcus formosensis strain M20011502 FF20a2]
ATAGCTAAAAAAAAATCAACATTTCTTTGTCAAGAATGTGGCTACAAATCAGTGAAAAAACTCGGACGTTGTCCCAATTG
TGGGGCTTGGGGCTCCTTTGTTGAAGAAGTAGAAGTCCAAGAGGTAAAAAATCAGAGAGTAAGTATGACAGGCGAGCACT
CTAAACCGATGAAGTTAGATCAGGTTGAACTTTTTGATACACCACGAGTCGAGACTGACTTAGATGAATTTAATCGAGTG
CTTGGTGGGGGTGTCGTTCCAGGAAGTCTTGTTCTTATTGGAGGTGATCCAGGAATTGGTAAATCTACTCTGCTGCTTCA
AGTATCTACGCAACTTGCTTCAAGGGGACGTGTTCTTTATGTGAGTGGTGAGGAGTCGGCCCAGCAAATTAAACTGCGTG
CCGAGCGTTTGGGCGATATTGATACAGATTTTTACCTTTATGCCGAAACCAATATGCAAAGTATCCGAAATGAAGTGGAA
AGGTTACAACCAGACTTTCTCATTGTGGACTCGATTCAAACTATTATGACGCCTGAAATCCAGAGTACTCAAGGTTCGGT
TAGTCAGGTGCGCGAGGTTACAGGAGAGCTAATGCAGTTGGCCAAAACCAATAATATTGCAACCTTTATTGTCGGTCATG
TCACCAAGGAAGGACAACTTGCAGGCCCACGTATGTTGGAACATATGGTTGATACCGTCTTGTATTTTGAGGGAGAACGT
CAAAATACATTCCGAATTTTACGTGCGGTCAAAAACCGCTTTGGTTCAACAAATGAAATTGGGATTTTCGAGATGCAGGG
CAGTGGTTTAGTGGAAGTAACCAACCCGAGCGAAGTTTTTCTTGAGGAGCGCTTAGAAGGATCTACTGGTTCTGCTATCG
TTTGTGCATTAGAGGGTACTCGTCCAATATTAGTTGAAATTCAAGCTTTGACTACACCAACCATGTTTGGGAACGCGAAA
CGCACGACTTCTGGTTTGGACTTTAACCGCGTGAGTTTAATCATGGCAGTACTCGAAAAGCGGGCCGGATTTCTTTTGCA
GCAACAAGACGCTTACTTGAAGTCAGCAGGTGGCGTTAAATTGGATGAGCCTGCAATTGACTTGGCAGTTGCAGTAGCTA
TTGCTTCTAGCTACAAAGAAGAGCCAACAGATGCACGCGACTGCTTTATTGGTGAAATTGGCTTAACTGGTGAAATCCGT
CGTGTCACACGCATGGAGCAACGTCTTAATGAAGCGAGTAAATTAGGTTTCCAAAAAGTTTATGCGCCTAAGAATAGCTT
AGCAGGCGTAAATACTCCAGAAAACTTGAAAGTGGTTGGTGTGACAACTTTATCTGAATGTTTGAAAAAAGTATTTGGTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-425)

AAA domain (AAA_25)

(77-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

80.132

100

0.801
  radA Streptococcus pneumoniae Rx1

80.132

100

0.801
  radA Streptococcus pneumoniae D39

80.132

100

0.801
  radA Streptococcus pneumoniae R6

80.132

100

0.801
  radA Streptococcus pneumoniae TIGR4

80.132

100

0.801
  radA Streptococcus mitis SK321

80.132

100

0.801
  radA Bacillus subtilis subsp. subtilis str. 168

61.438

100

0.623