Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VNN51_RS02375 Genome accession   NZ_CP141727
Coordinates   483711..484862 (-) Length   383 a.a.
NCBI ID   WP_017369483.1    Uniprot ID   A0A9Q8Y2S1
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 478711..489862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS02345 (VNN51_02345) - 479090..479770 (-) 681 WP_017369477.1 GTP pyrophosphokinase family protein -
  VNN51_RS02350 (VNN51_02350) - 480087..480683 (+) 597 WP_017369478.1 CYTH domain-containing protein -
  VNN51_RS02355 (VNN51_02355) - 480813..481331 (+) 519 WP_017369479.1 hypothetical protein -
  VNN51_RS02360 (VNN51_02360) - 481390..481746 (-) 357 WP_017369480.1 YlbG family protein -
  VNN51_RS02365 (VNN51_02365) - 481730..482104 (-) 375 WP_017369481.1 YlbF family regulator -
  VNN51_RS02370 (VNN51_02370) - 482309..483673 (+) 1365 WP_165711820.1 amino acid permease -
  VNN51_RS02375 (VNN51_02375) recA 483711..484862 (-) 1152 WP_017369483.1 recombinase RecA Machinery gene
  VNN51_RS02380 (VNN51_02380) mutM 484963..485787 (-) 825 WP_213432233.1 DNA-formamidopyrimidine glycosylase -
  VNN51_RS02385 (VNN51_02385) - 485975..486718 (-) 744 WP_279359101.1 MurR/RpiR family transcriptional regulator -
  VNN51_RS02390 (VNN51_02390) - 487053..487850 (+) 798 WP_279359100.1 tyrosine-protein phosphatase -
  VNN51_RS02395 (VNN51_02395) - 487875..489158 (+) 1284 WP_279360543.1 PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40981.90 Da        Isoelectric Point: 5.0719

>NTDB_id=919024 VNN51_RS02375 WP_017369483.1 483711..484862(-) (recA) [Lactococcus formosensis strain M20011502 FF20a2]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIDSDEENEKEDAKPVKADEKVKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=919024 VNN51_RS02375 WP_017369483.1 483711..484862(-) (recA) [Lactococcus formosensis strain M20011502 FF20a2]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCATTAAAAGATGC
ACTTGACCTCATCGAAAAAGATTTTGGTAAAGGTTCTTTGATGCGTTTAGGGGAAGCTGCGAGTCAAAAAGTTCAAGTGA
CAAGTTCAGGTAGTTTGGCCTTGGATATTGCGCTTGGTGCAGGAGGTTACCCTAAAGGTCGTATCATCGAAATTTATGGT
CCGGAAAGTTCTGGTAAGACAACAGTTGCGCTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGTGGTATTGCTGCCTTTAT
CGATGCAGAGCATGCTTTGGACCCCGTCTATGCAGCAGCGATCGGCGTAGATATTGACCAGCTTCTTTTGTCACAACCAG
ACTATGGGGAACAAGGTTTACAAATTGCTGAGAAATTGATTGAGTCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCTTTGACACCACGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCGATCTTTATCAACCAATTGCGCGAAAAAGTCG
GTGTTATGTTTGGTAGCCCAGAAACAACGCCTGGTGGTCGTGCTTTGAAATTCTATGCTTCTGTACGTTTAGACGTTCGT
GGTAGCACAAAAATCGAAGAAGGCTCTGGTGACAACAAAACAGCCATTGGTAAGTTGACGAAGATTAAAGTTGTTAAAAA
CAAAGTTGCGCCACCATTTAAAGTTGCTTTAGTAGATATCATGTTTGGTGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CAATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGTGCTTGGTTCTCTTATAATGACGAAAAGATCGGTCAGGGTGCG
GAGAAAGCAAAAGCTTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGACAGTGATGAAGAAAATGAAAAAGAAGATGCTAAGCCAGTAAAAGCAGATGAAAAAGTAAAGGTTGAAGCTGCTG
GAGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.648

91.906

0.796
  recA Streptococcus mitis NCTC 12261

77.344

100

0.775
  recA Streptococcus pneumoniae Rx1

77.895

99.217

0.773
  recA Streptococcus pneumoniae D39

77.895

99.217

0.773
  recA Streptococcus pneumoniae R6

77.895

99.217

0.773
  recA Streptococcus pneumoniae TIGR4

77.895

99.217

0.773
  recA Streptococcus mitis SK321

76.823

100

0.77
  recA Streptococcus mutans UA159

76.986

95.3

0.734
  recA Streptococcus pyogenes NZ131

80.523

89.817

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

63.636

91.906

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.143

89.556

0.512
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Helicobacter pylori strain NCTC11637

58.036

87.728

0.509
  recA Helicobacter pylori 26695

58.036

87.728

0.509
  recA Acinetobacter baylyi ADP1

60.185

84.595

0.509
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baumannii D1279779

60.185

84.595

0.509
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Neisseria gonorrhoeae strain FA1090

57.015

87.467

0.499
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.768

0.488
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475