Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VNN51_RS01155 Genome accession   NZ_CP141727
Coordinates   234261..236066 (-) Length   601 a.a.
NCBI ID   WP_279361501.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 229261..241066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS01140 (VNN51_01140) alaS 229703..232321 (-) 2619 WP_017368907.1 alanine--tRNA ligase -
  VNN51_RS01145 (VNN51_01145) - 232572..233480 (-) 909 WP_279360496.1 peptidyl-prolyl cis-trans isomerase -
  VNN51_RS01150 (VNN51_01150) - 233578..234261 (-) 684 WP_279360498.1 O-methyltransferase -
  VNN51_RS01155 (VNN51_01155) pepF 234261..236066 (-) 1806 WP_279361501.1 oligoendopeptidase F Regulator
  VNN51_RS01160 (VNN51_01160) - 236050..237054 (-) 1005 Protein_228 competence protein CoiA family protein -
  VNN51_RS01165 (VNN51_01165) - 237132..238232 (-) 1101 WP_213432063.1 YdcF family protein -
  VNN51_RS01170 (VNN51_01170) - 238311..239732 (-) 1422 WP_279360503.1 NCS2 family permease -
  VNN51_RS01175 (VNN51_01175) - 240095..240919 (+) 825 WP_165711384.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69842.22 Da        Isoelectric Point: 4.5447

>NTDB_id=919012 VNN51_RS01155 WP_279361501.1 234261..236066(-) (pepF) [Lactococcus formosensis strain M20011502 FF20a2]
MAKKRDEIAENLTWDLSTVFENDAAWELELKSVSEKLETVNRYEGHLLDSAQSLLEITEVELEISRAVEKVYVYASMKHD
QDTQVSRYQEYDARATNLYAKFGEMFAFYEPEFLALTPERYESFRREEPKLEQYSHMFERLFAKKEHILSPKEEKLLAGA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKDRHVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKTRGYDSARQAALSSNFIPEEVYDRLLESVNKYLPLLHRYIKLREQILDLDDDLKMYDVYTPLSDLDYKFNYPEAV
EKAEEVLQVFGPEYAAHVKKAFDERWIDVAENIGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAETTDEKERFAILNHWLDGFRGTVFRQSQFAEFEHEIHKAEQEGKVLTSE
FMNQLYAGLNEKYYGLPALENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEAIVNGGSEAREKYLTYLKAGSSDYP
LAVIAQAGVDMEEITYLESAFAVFEKRLIELENLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=919012 VNN51_RS01155 WP_279361501.1 234261..236066(-) (pepF) [Lactococcus formosensis strain M20011502 FF20a2]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACCGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGTGTCTCGGAAAAGTTAGAGACGGTAAACCGCTACGAAGGACATCTTTTAGATAGTGCTCAAAGCT
TGTTAGAAATCACGGAAGTTGAGCTAGAGATTTCGCGTGCTGTGGAAAAGGTTTATGTTTATGCTTCAATGAAGCATGAT
CAAGATACGCAAGTGAGTCGTTACCAAGAATATGATGCTAGAGCTACAAATTTATATGCTAAGTTTGGTGAAATGTTTGC
CTTTTATGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAGAGTTTTAGAAGAGAAGAGCCCAAGTTGGAACAGT
ATTCTCATATGTTTGAACGGCTTTTTGCTAAAAAAGAGCATATTTTAAGTCCAAAAGAGGAAAAACTGTTAGCCGGTGCC
AGTGAGATTTTTGGTGCAGCTGCCGAAACTTTCGAAATTTTTGATAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACATGGTAATTATATCTCGCTCATGGAAAGTAAGGACCGTCATGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGTAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGACACGTGGGTATGATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAGGCTTTTGGAGTCGGTTAATAAATATTTGCCTCTTTTACATCGTTATATCAAATTACGCGAGCAAATTTTAGATT
TAGATGATGATTTGAAGATGTATGATGTCTACACACCCTTATCTGACTTGGATTATAAGTTTAACTATCCAGAAGCAGTA
GAGAAAGCAGAAGAAGTTCTTCAAGTTTTCGGCCCTGAGTATGCAGCACATGTTAAAAAAGCTTTTGATGAGCGTTGGAT
TGATGTAGCAGAAAATATTGGCAAACGTTCTGGCGCATACTCGGGAGGATGCTATGATACAAATGCCTTTATGCTCTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTTACCTTAGTTCATGAAATGGGACACAGTATGCATTCTACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGATTATCCAATCTTTCTTGCAGAAATTGCCTCAACAACCAATGAAAATATCTTGACGGA
AAGTTTACTTGCGGAGACGACAGATGAAAAAGAGCGTTTTGCCATTTTAAACCACTGGCTTGATGGCTTCCGGGGAACCG
TTTTTCGTCAAAGCCAATTTGCTGAATTTGAACATGAAATTCATAAAGCTGAGCAAGAAGGAAAAGTCCTAACCAGTGAA
TTCATGAACCAGCTCTACGCAGGTCTTAATGAGAAGTATTATGGTTTGCCTGCTCTAGAAAATCCTGAAATTCAGTACGA
GTGGGCACGCATTCCGCATTTTTATTATAATTATTATGTTTTCCAATATGCAACAGGATTTGCAGCAGCAACTTATCTTG
CAGAGGCTATCGTAAATGGTGGATCAGAAGCGCGTGAAAAATACCTCACTTATCTCAAAGCTGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTAGATATGGAAGAAATAACGTATTTAGAATCGGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTGGAAAATTTAGTCGAAAAAGGAGTCCATTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.892

100

0.649