Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VNN28_RS03980 Genome accession   NZ_CP141725
Coordinates   803898..804941 (+) Length   347 a.a.
NCBI ID   WP_338997904.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M03102409 EE5d7     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 798898..809941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN28_RS03965 (VNN28_03965) - 801440..802786 (+) 1347 WP_003133148.1 glucose-6-phosphate isomerase -
  VNN28_RS03970 (VNN28_03970) rsmD 802882..803421 (+) 540 WP_165714011.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VNN28_RS03975 (VNN28_03975) coaD 803411..803908 (+) 498 WP_165714012.1 pantetheine-phosphate adenylyltransferase -
  VNN28_RS03980 (VNN28_03980) sepM 803898..804941 (+) 1044 WP_338997904.1 SepM family pheromone-processing serine protease Regulator
  VNN28_RS03985 (VNN28_03985) adhE 804973..807666 (-) 2694 WP_096368961.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  VNN28_RS03990 (VNN28_03990) - 807821..808861 (-) 1041 WP_338997906.1 lactonase family protein -
  VNN28_RS03995 (VNN28_03995) rpsB 809136..809909 (+) 774 WP_338997908.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37735.98 Da        Isoelectric Point: 7.3466

>NTDB_id=918995 VNN28_RS03980 WP_338997904.1 803898..804941(+) (sepM) [Lactococcus formosensis strain M03102409 EE5d7]
MKNEKIKKHKKLKLFFAVALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNRQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGRTFKSSTEMIDYVSQQKVGGSVTINYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPEVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNSDMKIVPVKTIQDAIDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=918995 VNN28_RS03980 WP_338997904.1 803898..804941(+) (sepM) [Lactococcus formosensis strain M03102409 EE5d7]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCGTCGCGCTACCGCTTCTTATTGTAGTGGG
GTTGTTCTTCCCCTTACCTTACTATATCGAGCAACCAGGAGGAACCATTCCAGTTAACCAAATGGTTGATGTCGCAGGGA
AAAAAGATGAGCATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGCGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCTACTGTTGTGAGTAGTGAAGAGATGACAGGCGGGATGACCAACCGGCAATTTGATTTGGTTAA
TCAGTTCTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTGGCAGGGAAGCCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCGACATTTAAAAATGACTTACAACTTTCGGATACGATAACAGCA
GTTAATGGTCGTACTTTCAAATCTTCAACTGAAATGATTGACTATGTGTCTCAACAAAAAGTTGGGGGTAGCGTTACTAT
CAATTATACACGCGTAGATGGCAGTAATCATGAAGCCACAGGGAAGTATATTAAGCTGAGTAATGGTAAGACGGGGATTG
GTATTGGTTTAGTAGACCACACACAAGTTGTGACAGACCCTGAAGTTAAAATTGATGCCGGAAGTATTGGCGGACCGAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACTATCAATGAGGATGGTAGCATCGGGCAAATAGGTGGCGTCGATAAAAAAGTTGCTACAGCAAGTAATGCGGGTG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATTCAGATATGAAAATCGTACCTGTAAAGACGATTCAAGATGCAATAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.415

100

0.484