Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABN560_RS09100 Genome accession   NZ_CP161338
Coordinates   1888687..1889343 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain PEC1012     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883687..1894343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN560_RS09065 dcyD 1884567..1885553 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  ABN560_RS09070 tcyL 1885568..1886236 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ABN560_RS09075 tcyN 1886233..1886985 (+) 753 WP_097749335.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ABN560_RS09080 sdiA 1887215..1887937 (+) 723 WP_001154279.1 transcriptional regulator SdiA -
  ABN560_RS09085 yecF 1888004..1888228 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ABN560_RS09090 yecU 1888215..1888391 (-) 177 WP_000590347.1 protein YecU -
  ABN560_RS09095 - 1888474..1888545 (-) 72 Protein_1773 transcriptional regulator -
  ABN560_RS09100 letA 1888687..1889343 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ABN560_RS09105 uvrC 1889340..1891172 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ABN560_RS09110 pgsA 1891229..1891777 (+) 549 WP_001160188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABN560_RS09130 yecA 1892426..1893091 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=918992 ABN560_RS09100 WP_000611335.1 1888687..1889343(+) (letA) [Escherichia coli strain PEC1012]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=918992 ABN560_RS09100 WP_000611335.1 1888687..1889343(+) (letA) [Escherichia coli strain PEC1012]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486