Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OC193_RS16370 Genome accession   NZ_AP025477
Coordinates   132792..133886 (+) Length   364 a.a.
NCBI ID   WP_048659069.1    Uniprot ID   -
Organism   Vibrio crassostreae strain LMG 22240     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 127792..138886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS16340 - 129552..129788 (-) 237 WP_048659065.1 hypothetical protein -
  OC193_RS16345 - 129959..130585 (-) 627 WP_048663326.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OC193_RS16350 - 130738..131052 (-) 315 WP_004730049.1 DUF496 family protein -
  OC193_RS16355 - 131248..131448 (+) 201 WP_048659067.1 hypothetical protein -
  OC193_RS16360 - 131512..132168 (+) 657 WP_019823422.1 YceH family protein -
  OC193_RS16365 - 132169..132483 (+) 315 WP_048659068.1 GIY-YIG nuclease family protein -
  OC193_RS16370 luxP 132792..133886 (+) 1095 WP_048659069.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OC193_RS16375 luxQ 133886..136456 (+) 2571 WP_048663327.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OC193_RS16380 - 136505..137164 (-) 660 WP_048663328.1 PilZ domain-containing protein -
  OC193_RS16385 - 137360..137710 (+) 351 WP_048663329.1 HopJ type III effector protein -
  OC193_RS16390 - 137829..138137 (-) 309 WP_080967369.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41355.62 Da        Isoelectric Point: 5.1412

>NTDB_id=91898 OC193_RS16370 WP_048659069.1 132792..133886(+) (luxP) [Vibrio crassostreae strain LMG 22240]
MKRLLMLFGLAVFSASALSHGTHVLNGYWEYQDYLSNFPEQKALTDKMVEAVQNHPVPLRRIQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDRLKIRYQINQVFTRINADLAQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLTSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLADYFKQVSPPDSKYSVLYYSQGYISDARGDTFIHEVNTDTNFTLKSSFYTKSN
KDSGYQAAKISIENDKDLDFIYACSTDVALGAAEAIRESGRDILVNGWGGGSAELEAIARGDLDVTIMRMNDDTGIAMAE
AIKWDLVGLEVPTVYSGEFEIVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=91898 OC193_RS16370 WP_048659069.1 132792..133886(+) (luxP) [Vibrio crassostreae strain LMG 22240]
ATGAAACGTTTACTTATGTTGTTTGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCACGGTACTCATGTCCTCAATGG
ATATTGGGAATACCAAGATTATCTTTCCAATTTTCCAGAACAAAAAGCATTGACCGATAAAATGGTCGAGGCTGTACAAA
ATCACCCTGTGCCACTGAGAAGAATTCAAGACGAGCCAATTACGATTTCTGTGGTGTATCCGGGTCAACAGATCTCGGAT
TACTGGGTTCGTAATATTCAAGCTTTTGAGAAGCGTCTCGATAGGCTGAAGATTCGCTACCAAATAAATCAAGTATTTAC
CCGTATTAATGCTGATCTCGCACAGCAGAGCATTTCATTGCAAGAAGCGATTGAAAACAAAACGGACTATTTGATTTTCA
CGCTAGATACAACGCGCCACCGCAAGTTTATTGAGCACGTGTTGACCTCCACAGATACTAAGTTGATTCTGCAAAATATT
ACGACGCCAGTGCGAGCTTGGGCGGATAGACAGCCATTTATGTATGTGGGCTTTGACCATGCGACAGGCAGCTTAAAACT
GGCGGACTATTTTAAACAAGTAAGCCCACCAGACAGTAAGTATTCTGTTTTGTATTACTCACAAGGCTATATCAGTGATG
CGCGTGGAGATACTTTTATCCATGAAGTGAATACTGATACTAACTTTACCCTTAAGTCTTCGTTTTACACCAAATCAAAC
AAAGACAGTGGCTACCAAGCGGCTAAAATCAGCATAGAGAACGATAAGGATCTAGACTTTATCTATGCATGCTCAACGGA
TGTTGCCCTAGGTGCAGCGGAAGCTATTCGCGAATCTGGTCGAGACATCTTAGTGAATGGTTGGGGAGGTGGCTCTGCTG
AACTTGAAGCCATTGCGAGGGGCGACCTAGATGTAACTATCATGCGTATGAACGACGATACGGGTATTGCGATGGCAGAG
GCGATCAAATGGGATCTAGTCGGTTTGGAAGTGCCTACCGTTTACTCTGGTGAATTTGAAATTGTGACCAAGGAAGATTC
CCCAGAACGTATTTCAGAACTTAAACAGCGAGCATTTAGGTACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.842

100

0.632

Multiple sequence alignment