Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VNN48_RS08620 | Genome accession | NZ_CP141723 |
| Coordinates | 1756783..1759233 (+) | Length | 816 a.a. |
| NCBI ID | WP_253008338.1 | Uniprot ID | - |
| Organism | Lactococcus formosensis strain PAQ-208 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1751783..1764233
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNN48_RS08595 (VNN48_08590) | - | 1752706..1753218 (+) | 513 | WP_003135164.1 | adenine phosphoribosyltransferase | - |
| VNN48_RS08600 (VNN48_08595) | rpoE | 1753344..1753904 (+) | 561 | WP_017369379.1 | DNA-directed RNA polymerase subunit delta | - |
| VNN48_RS08605 (VNN48_08600) | mltG | 1754010..1755722 (+) | 1713 | WP_407281135.1 | endolytic transglycosylase MltG | - |
| VNN48_RS08610 (VNN48_08605) | greA | 1755748..1756221 (+) | 474 | WP_017369377.1 | transcription elongation factor GreA | - |
| VNN48_RS08615 (VNN48_08610) | - | 1756341..1756793 (+) | 453 | WP_017368805.1 | CtsR family transcriptional regulator | - |
| VNN48_RS08620 (VNN48_08615) | clpC | 1756783..1759233 (+) | 2451 | WP_253008338.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VNN48_RS08625 (VNN48_08620) | hpf | 1759356..1759913 (+) | 558 | WP_003134010.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| VNN48_RS08630 (VNN48_08625) | pflB | 1760161..1762494 (+) | 2334 | WP_003134012.1 | formate C-acetyltransferase | - |
| VNN48_RS08635 (VNN48_08630) | - | 1763003..1763263 (+) | 261 | WP_407281138.1 | hypothetical protein | - |
| VNN48_RS08640 (VNN48_08635) | coaE | 1763445..1764050 (+) | 606 | WP_407281140.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 816 a.a. Molecular weight: 91197.40 Da Isoelectric Point: 6.0555
>NTDB_id=918950 VNN48_RS08620 WP_253008338.1 1756783..1759233(+) (clpC) [Lactococcus formosensis strain PAQ-208]
MKFNEKDYTPQVIRVLEKSVDYAHKFNYAWVESSHLLAALAEVPASLAFTLLNSEKIDLEEMLIDIEDFSSQVKTKKSEI
KLSPRVETIIEQARALAQNNDKNRIGTEHLLYMLLANEAGFAGQLLREQNINIVNLRKKLEQKAYLRVPERRKAVTPASK
RNLSGKVSETTTTPTLDTVSTDLTKAAREGKLDPMIGREREVERLIHILSRRTKNNPVLVGEPGVGKSAIIEGFATRVAA
GNVPVGLRGSRIMALNMAMVVAGTKFRGEFEDRLTAIVDEVTHDKDVIVFIDELHTIIGAGGGMDSVNDASNILKPALAR
GEFQLIGATTYQEYQKYIEKDEALERRFARVNVEEPSEDETVAILQGLKEKFEAYHAVKFEEGTLERAVSLSNRYMPSRR
LPDKAIDLLDEAAAKVKITSKTNYTKLDELKAELKAEELRLQKAVVALDIVEAQEIEKDVEKLTHKIDNFTVSENDNPLV
EESDVYAVVSNLTGIPLQQMTKTESERLINLEKELHKRVVGQEEAISAVSRAIRRARSGIADTRRPLGSFMFLGPTGVGK
TELAKALAESVFGSEENMIRVDMSEFMEKFSTSRLIGAPPGYVGYDEGGQLTEQVRNKPYSVILLDEVEKAHPDIFNIML
QILDDGFVTDTKGRKVDFRNTIIIMTSNLGATAIRDDKTVGFGAKSISTDYAAMKARIMEELKKQYRPEFLNRIDETIVF
HSLTEKEIEQVVKIMSKSLVSRLKDQNIKVKFTSAALKVIADKGFDPEYGARPLRKALQREVEDTLSEQLLAGEIHPGDT
ISIGSSNKKIRISVID
MKFNEKDYTPQVIRVLEKSVDYAHKFNYAWVESSHLLAALAEVPASLAFTLLNSEKIDLEEMLIDIEDFSSQVKTKKSEI
KLSPRVETIIEQARALAQNNDKNRIGTEHLLYMLLANEAGFAGQLLREQNINIVNLRKKLEQKAYLRVPERRKAVTPASK
RNLSGKVSETTTTPTLDTVSTDLTKAAREGKLDPMIGREREVERLIHILSRRTKNNPVLVGEPGVGKSAIIEGFATRVAA
GNVPVGLRGSRIMALNMAMVVAGTKFRGEFEDRLTAIVDEVTHDKDVIVFIDELHTIIGAGGGMDSVNDASNILKPALAR
GEFQLIGATTYQEYQKYIEKDEALERRFARVNVEEPSEDETVAILQGLKEKFEAYHAVKFEEGTLERAVSLSNRYMPSRR
LPDKAIDLLDEAAAKVKITSKTNYTKLDELKAELKAEELRLQKAVVALDIVEAQEIEKDVEKLTHKIDNFTVSENDNPLV
EESDVYAVVSNLTGIPLQQMTKTESERLINLEKELHKRVVGQEEAISAVSRAIRRARSGIADTRRPLGSFMFLGPTGVGK
TELAKALAESVFGSEENMIRVDMSEFMEKFSTSRLIGAPPGYVGYDEGGQLTEQVRNKPYSVILLDEVEKAHPDIFNIML
QILDDGFVTDTKGRKVDFRNTIIIMTSNLGATAIRDDKTVGFGAKSISTDYAAMKARIMEELKKQYRPEFLNRIDETIVF
HSLTEKEIEQVVKIMSKSLVSRLKDQNIKVKFTSAALKVIADKGFDPEYGARPLRKALQREVEDTLSEQLLAGEIHPGDT
ISIGSSNKKIRISVID
Nucleotide
Download Length: 2451 bp
>NTDB_id=918950 VNN48_RS08620 WP_253008338.1 1756783..1759233(+) (clpC) [Lactococcus formosensis strain PAQ-208]
ATGAAATTTAATGAAAAGGACTATACACCACAAGTCATAAGAGTGCTTGAGAAGTCTGTTGACTATGCGCATAAGTTTAA
CTACGCTTGGGTTGAAAGCTCGCACCTATTGGCTGCATTGGCTGAGGTTCCGGCTTCATTGGCATTTACGCTACTTAATT
CAGAAAAAATTGATTTGGAAGAAATGTTAATCGACATCGAAGATTTTTCAAGTCAAGTGAAGACGAAGAAATCAGAAATA
AAGCTTAGCCCAAGAGTTGAGACAATTATTGAGCAAGCACGTGCATTGGCTCAAAATAATGATAAAAACCGTATCGGGAC
AGAGCATCTCTTATATATGCTTTTAGCAAATGAAGCTGGCTTTGCAGGACAACTTTTACGTGAGCAAAACATCAATATCG
TTAATCTCCGCAAAAAGCTAGAGCAAAAAGCATATCTACGTGTACCAGAACGCCGTAAAGCGGTGACACCAGCTTCGAAA
AGAAACTTGTCAGGGAAAGTTTCCGAAACCACGACAACGCCTACTTTAGACACGGTATCGACAGATTTGACCAAAGCAGC
CCGTGAAGGCAAGCTTGATCCAATGATTGGAAGAGAGCGGGAAGTCGAACGCCTCATCCACATTCTGAGTCGTCGGACAA
AAAATAACCCTGTTCTTGTTGGTGAACCTGGTGTTGGTAAGTCAGCGATTATTGAAGGCTTTGCGACACGTGTGGCTGCA
GGGAATGTTCCTGTAGGTCTACGTGGCAGCCGTATTATGGCCTTGAACATGGCGATGGTTGTTGCGGGGACAAAATTCCG
TGGTGAATTTGAAGATCGTTTGACAGCCATCGTTGATGAAGTGACACATGATAAAGATGTGATCGTCTTTATCGATGAAC
TTCATACCATTATCGGTGCTGGTGGAGGTATGGACTCTGTTAATGATGCTTCTAACATCTTAAAACCTGCATTGGCACGG
GGTGAGTTTCAACTTATCGGGGCAACAACTTATCAAGAATATCAAAAATACATTGAAAAAGATGAAGCCCTAGAACGTCG
TTTTGCCCGTGTTAATGTTGAAGAACCATCAGAAGATGAAACAGTTGCAATCTTACAAGGGTTAAAAGAAAAATTTGAAG
CTTACCATGCGGTCAAATTTGAAGAGGGAACTTTGGAACGTGCTGTCAGCCTGAGTAATCGTTATATGCCAAGTCGTCGT
CTGCCTGATAAAGCAATTGATCTCCTTGATGAAGCCGCAGCCAAAGTTAAAATCACGAGTAAAACAAATTACACCAAGCT
TGACGAATTAAAAGCAGAGTTAAAAGCAGAAGAGCTGAGATTACAAAAAGCAGTTGTAGCACTTGATATTGTTGAAGCAC
AGGAGATTGAAAAAGATGTTGAAAAGTTAACGCATAAAATTGATAACTTTACAGTATCGGAAAATGATAATCCTTTGGTT
GAGGAAAGCGATGTTTATGCTGTCGTTTCCAACCTTACAGGAATCCCTCTCCAACAGATGACGAAAACAGAAAGTGAACG
TCTGATTAATCTAGAAAAAGAGCTACATAAGCGTGTAGTTGGTCAGGAAGAAGCGATATCGGCTGTTTCTCGTGCCATAA
GACGTGCACGTTCAGGTATCGCCGATACGAGACGTCCTTTGGGTTCATTTATGTTCCTTGGTCCGACAGGAGTTGGGAAG
ACAGAGCTTGCTAAGGCTTTAGCGGAAAGTGTTTTTGGAAGTGAAGAAAACATGATTCGCGTAGACATGAGTGAATTTAT
GGAAAAATTCTCGACATCACGCCTGATTGGAGCGCCTCCAGGCTACGTAGGTTATGATGAAGGGGGGCAACTGACAGAGC
AAGTCCGTAATAAGCCTTATTCTGTTATCCTTCTTGATGAAGTAGAAAAGGCCCATCCTGATATTTTCAATATCATGTTA
CAAATTTTAGATGATGGTTTCGTTACAGACACGAAGGGTCGTAAAGTTGATTTCCGTAATACCATCATCATTATGACATC
TAACCTTGGAGCAACAGCTATTCGTGATGATAAAACAGTTGGTTTTGGTGCTAAATCAATCTCAACAGATTATGCAGCTA
TGAAAGCGAGAATCATGGAAGAACTGAAGAAACAGTACCGTCCAGAATTTCTCAATCGTATCGATGAAACCATTGTCTTC
CATTCACTCACAGAAAAAGAGATTGAACAAGTCGTGAAAATTATGAGTAAATCTCTCGTATCACGCTTGAAAGATCAAAA
TATCAAAGTGAAATTTACATCTGCTGCACTAAAAGTTATTGCAGATAAAGGATTTGATCCTGAATATGGTGCCCGTCCGT
TACGTAAAGCCTTGCAACGTGAGGTTGAAGACACGCTTAGTGAGCAATTGCTTGCAGGTGAAATTCATCCGGGGGATACG
ATTTCTATTGGTTCTTCTAATAAAAAGATTAGAATAAGTGTTATTGATTGA
ATGAAATTTAATGAAAAGGACTATACACCACAAGTCATAAGAGTGCTTGAGAAGTCTGTTGACTATGCGCATAAGTTTAA
CTACGCTTGGGTTGAAAGCTCGCACCTATTGGCTGCATTGGCTGAGGTTCCGGCTTCATTGGCATTTACGCTACTTAATT
CAGAAAAAATTGATTTGGAAGAAATGTTAATCGACATCGAAGATTTTTCAAGTCAAGTGAAGACGAAGAAATCAGAAATA
AAGCTTAGCCCAAGAGTTGAGACAATTATTGAGCAAGCACGTGCATTGGCTCAAAATAATGATAAAAACCGTATCGGGAC
AGAGCATCTCTTATATATGCTTTTAGCAAATGAAGCTGGCTTTGCAGGACAACTTTTACGTGAGCAAAACATCAATATCG
TTAATCTCCGCAAAAAGCTAGAGCAAAAAGCATATCTACGTGTACCAGAACGCCGTAAAGCGGTGACACCAGCTTCGAAA
AGAAACTTGTCAGGGAAAGTTTCCGAAACCACGACAACGCCTACTTTAGACACGGTATCGACAGATTTGACCAAAGCAGC
CCGTGAAGGCAAGCTTGATCCAATGATTGGAAGAGAGCGGGAAGTCGAACGCCTCATCCACATTCTGAGTCGTCGGACAA
AAAATAACCCTGTTCTTGTTGGTGAACCTGGTGTTGGTAAGTCAGCGATTATTGAAGGCTTTGCGACACGTGTGGCTGCA
GGGAATGTTCCTGTAGGTCTACGTGGCAGCCGTATTATGGCCTTGAACATGGCGATGGTTGTTGCGGGGACAAAATTCCG
TGGTGAATTTGAAGATCGTTTGACAGCCATCGTTGATGAAGTGACACATGATAAAGATGTGATCGTCTTTATCGATGAAC
TTCATACCATTATCGGTGCTGGTGGAGGTATGGACTCTGTTAATGATGCTTCTAACATCTTAAAACCTGCATTGGCACGG
GGTGAGTTTCAACTTATCGGGGCAACAACTTATCAAGAATATCAAAAATACATTGAAAAAGATGAAGCCCTAGAACGTCG
TTTTGCCCGTGTTAATGTTGAAGAACCATCAGAAGATGAAACAGTTGCAATCTTACAAGGGTTAAAAGAAAAATTTGAAG
CTTACCATGCGGTCAAATTTGAAGAGGGAACTTTGGAACGTGCTGTCAGCCTGAGTAATCGTTATATGCCAAGTCGTCGT
CTGCCTGATAAAGCAATTGATCTCCTTGATGAAGCCGCAGCCAAAGTTAAAATCACGAGTAAAACAAATTACACCAAGCT
TGACGAATTAAAAGCAGAGTTAAAAGCAGAAGAGCTGAGATTACAAAAAGCAGTTGTAGCACTTGATATTGTTGAAGCAC
AGGAGATTGAAAAAGATGTTGAAAAGTTAACGCATAAAATTGATAACTTTACAGTATCGGAAAATGATAATCCTTTGGTT
GAGGAAAGCGATGTTTATGCTGTCGTTTCCAACCTTACAGGAATCCCTCTCCAACAGATGACGAAAACAGAAAGTGAACG
TCTGATTAATCTAGAAAAAGAGCTACATAAGCGTGTAGTTGGTCAGGAAGAAGCGATATCGGCTGTTTCTCGTGCCATAA
GACGTGCACGTTCAGGTATCGCCGATACGAGACGTCCTTTGGGTTCATTTATGTTCCTTGGTCCGACAGGAGTTGGGAAG
ACAGAGCTTGCTAAGGCTTTAGCGGAAAGTGTTTTTGGAAGTGAAGAAAACATGATTCGCGTAGACATGAGTGAATTTAT
GGAAAAATTCTCGACATCACGCCTGATTGGAGCGCCTCCAGGCTACGTAGGTTATGATGAAGGGGGGCAACTGACAGAGC
AAGTCCGTAATAAGCCTTATTCTGTTATCCTTCTTGATGAAGTAGAAAAGGCCCATCCTGATATTTTCAATATCATGTTA
CAAATTTTAGATGATGGTTTCGTTACAGACACGAAGGGTCGTAAAGTTGATTTCCGTAATACCATCATCATTATGACATC
TAACCTTGGAGCAACAGCTATTCGTGATGATAAAACAGTTGGTTTTGGTGCTAAATCAATCTCAACAGATTATGCAGCTA
TGAAAGCGAGAATCATGGAAGAACTGAAGAAACAGTACCGTCCAGAATTTCTCAATCGTATCGATGAAACCATTGTCTTC
CATTCACTCACAGAAAAAGAGATTGAACAAGTCGTGAAAATTATGAGTAAATCTCTCGTATCACGCTTGAAAGATCAAAA
TATCAAAGTGAAATTTACATCTGCTGCACTAAAAGTTATTGCAGATAAAGGATTTGATCCTGAATATGGTGCCCGTCCGT
TACGTAAAGCCTTGCAACGTGAGGTTGAAGACACGCTTAGTGAGCAATTGCTTGCAGGTGAAATTCATCCGGGGGATACG
ATTTCTATTGGTTCTTCTAATAAAAAGATTAGAATAAGTGTTATTGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
71.288 |
99.877 |
0.712 |
| clpC | Streptococcus thermophilus LMG 18311 |
48.873 |
100 |
0.505 |
| clpC | Streptococcus thermophilus LMD-9 |
48.873 |
100 |
0.505 |
| clpC | Streptococcus pneumoniae TIGR4 |
49.274 |
100 |
0.499 |
| clpC | Streptococcus pneumoniae Rx1 |
49.153 |
100 |
0.498 |
| clpC | Streptococcus pneumoniae D39 |
49.153 |
100 |
0.498 |
| clpC | Streptococcus mutans UA159 |
47.249 |
100 |
0.484 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
48.696 |
98.652 |
0.48 |
| clpE | Streptococcus mutans UA159 |
46.406 |
78.431 |
0.364 |