Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VNN48_RS07795 Genome accession   NZ_CP141723
Coordinates   1581637..1582998 (+) Length   453 a.a.
NCBI ID   WP_035001005.1    Uniprot ID   A0A9Q9D7X8
Organism   Lactococcus formosensis strain PAQ-208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1576637..1587998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS07760 (VNN48_07755) rpsM 1576654..1577019 (+) 366 WP_003133773.1 30S ribosomal protein S13 -
  VNN48_RS07765 (VNN48_07760) rpsK 1577037..1577420 (+) 384 WP_003133774.1 30S ribosomal protein S11 -
  VNN48_RS07770 (VNN48_07765) - 1577472..1578410 (+) 939 WP_407281038.1 DNA-directed RNA polymerase subunit alpha -
  VNN48_RS07775 (VNN48_07770) rplQ 1578426..1578806 (+) 381 WP_003133776.1 50S ribosomal protein L17 -
  VNN48_RS07780 (VNN48_07775) - 1579195..1580679 (+) 1485 WP_279359057.1 S-layer homology domain-containing protein -
  VNN48_RS07785 (VNN48_07780) - 1580689..1581126 (+) 438 WP_017368769.1 hypothetical protein -
  VNN48_RS07795 (VNN48_07790) radA 1581637..1582998 (+) 1362 WP_035001005.1 DNA repair protein RadA Machinery gene
  VNN48_RS07800 (VNN48_07795) - 1583133..1584209 (+) 1077 WP_017368771.1 PIN/TRAM domain-containing protein -
  VNN48_RS07805 (VNN48_07800) - 1584218..1584847 (+) 630 WP_407281041.1 pyridoxamine 5'-phosphate oxidase family protein -
  VNN48_RS07810 (VNN48_07805) - 1584983..1585489 (+) 507 WP_017368773.1 PepSY domain-containing protein -
  VNN48_RS07815 (VNN48_07810) ald 1585688..1586809 (+) 1122 WP_017368774.1 alanine dehydrogenase -
  VNN48_RS07820 (VNN48_07815) - 1586840..1587334 (-) 495 WP_017368775.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49730.94 Da        Isoelectric Point: 5.1662

>NTDB_id=918941 VNN48_RS07795 WP_035001005.1 1581637..1582998(+) (radA) [Lactococcus formosensis strain PAQ-208]
MAKKKSTFLCQECGYKSVKKLGRCPNCGAWGSFVEEVEVQEVKNQRVSMTGEHSKPMKLDQVELFDTPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDTDFYLYAETNMQSIRNEVE
RLQPDFLIVDSIQTIMTPEIQSTQGSVSQVREVTGELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
QNTFRILRAVKNRFGSTNEIGIFEMQGSGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEEPTDARDCFIGEIGLTGEIR
RVTRMEQRLNEASKLGFQKVYAPKNSLAGVNTPENLKVVGVTTLSECLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=918941 VNN48_RS07795 WP_035001005.1 1581637..1582998(+) (radA) [Lactococcus formosensis strain PAQ-208]
ATAGCTAAAAAAAAATCAACATTTCTTTGTCAAGAATGTGGCTACAAATCAGTGAAAAAACTCGGACGTTGTCCCAATTG
TGGGGCTTGGGGCTCCTTTGTTGAAGAAGTAGAAGTCCAAGAGGTAAAAAATCAGAGAGTAAGTATGACAGGCGAGCACT
CTAAACCGATGAAGTTAGATCAGGTTGAACTTTTTGATACACCACGAGTCGAGACTGACTTAGATGAATTTAATCGAGTG
CTTGGTGGTGGTGTCGTTCCAGGAAGTCTTGTTCTTATTGGAGGTGATCCAGGAATTGGTAAATCTACTTTGCTGCTTCA
AGTATCTACGCAACTTGCTTCAAGGGGACGTGTTCTTTATGTGAGTGGTGAGGAGTCGGCCCAGCAAATTAAACTGCGTG
CCGAGCGTTTGGGCGATATTGATACAGATTTTTACCTTTATGCCGAAACCAATATGCAAAGTATCCGAAATGAAGTGGAA
AGGTTACAACCAGACTTTCTCATTGTGGACTCGATTCAAACTATTATGACGCCTGAAATCCAGAGTACTCAAGGTTCGGT
TAGTCAGGTGCGCGAGGTTACAGGAGAGCTGATGCAGTTGGCCAAAACCAATAATATTGCAACCTTTATTGTCGGTCATG
TCACCAAGGAAGGACAACTTGCAGGCCCACGTATGTTGGAACATATGGTTGATACCGTCTTGTATTTTGAGGGAGAACGT
CAAAATACATTCCGAATTTTACGTGCGGTCAAAAACCGCTTTGGTTCAACAAATGAAATTGGGATTTTCGAGATGCAGGG
CAGTGGTTTAGTGGAAGTAACCAACCCGAGCGAAGTTTTTCTTGAGGAGCGCTTAGAAGGATCTACTGGTTCTGCTATCG
TTTGTGCATTAGAGGGTACTCGTCCAATATTAGTTGAAATTCAAGCTTTGACTACACCAACCATGTTTGGGAACGCGAAA
CGCACGACTTCTGGTTTGGACTTTAACCGCGTGAGTTTAATCATGGCAGTACTCGAAAAGCGGGCCGGATTTCTTTTGCA
GCAACAAGACGCTTACTTGAAGTCAGCAGGTGGCGTTAAATTGGATGAGCCTGCAATTGACTTGGCAGTTGCAGTAGCTA
TTGCTTCTAGCTACAAAGAAGAGCCAACAGATGCACGCGACTGCTTTATTGGTGAAATTGGCTTAACTGGTGAAATCCGT
CGTGTCACACGCATGGAGCAACGTCTTAATGAAGCGAGTAAATTAGGTTTCCAAAAAGTTTATGCGCCTAAGAATAGCTT
AGCAGGCGTAAATACTCCAGAAAACTTGAAAGTGGTTGGTGTGACAACTTTATCTGAATGTTTGAAAAAAGTATTTGGTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-425)

AAA domain (AAA_25)

(77-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

80.132

100

0.801
  radA Streptococcus pneumoniae Rx1

80.132

100

0.801
  radA Streptococcus pneumoniae D39

80.132

100

0.801
  radA Streptococcus pneumoniae R6

80.132

100

0.801
  radA Streptococcus pneumoniae TIGR4

80.132

100

0.801
  radA Streptococcus mitis SK321

80.132

100

0.801
  radA Bacillus subtilis subsp. subtilis str. 168

61.438

100

0.623