Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   VNN48_RS06865 Genome accession   NZ_CP141723
Coordinates   1407023..1407811 (+) Length   262 a.a.
NCBI ID   WP_253008337.1    Uniprot ID   A0A9X4PBV8
Organism   Lactococcus formosensis strain PAQ-208     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402023..1412811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS06865 (VNN48_06860) spo0J 1407023..1407811 (+) 789 WP_253008337.1 ParB/RepB/Spo0J family partition protein Regulator
  VNN48_RS06870 (VNN48_06865) dnaA 1408067..1409425 (+) 1359 WP_017370087.1 chromosomal replication initiator protein DnaA -
  VNN48_RS06875 (VNN48_06870) dnaN 1409589..1410731 (+) 1143 WP_407280935.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 30506.32 Da        Isoelectric Point: 9.2819

>NTDB_id=918933 VNN48_RS06865 WP_253008337.1 1407023..1407811(+) (spo0J) [Lactococcus formosensis strain PAQ-208]
MEEKIYQLNIEDINKNPYQPRRNFDSDKLNELSHSIEVNGVLQPIIVRKSNLFGYELLAGERRLRASKLANLDKIPAIIR
SYSDNDMMVLSILENLQRDDMSPLDEAESIKKIIEKSSMTHDEVAKHLGKSRSYISNLLRILKLPQEILLLLEEKKISLA
HARTLLAEENKEKQVFLAHKTIQEKLNVRQLEDLIYQKDSNKKISNKKSIYIVEKEKELTKCLGISNKISYNEKLQKGKL
ELYFESLEKLEELLNKLTKNSQ

Nucleotide


Download         Length: 789 bp        

>NTDB_id=918933 VNN48_RS06865 WP_253008337.1 1407023..1407811(+) (spo0J) [Lactococcus formosensis strain PAQ-208]
ATGGAAGAAAAAATTTATCAACTAAATATAGAAGATATTAATAAAAACCCTTATCAACCACGTAGAAATTTTGATAGTGA
TAAATTAAATGAATTATCGCACTCTATAGAAGTTAATGGTGTACTTCAACCTATTATTGTTCGTAAAAGTAATCTCTTTG
GCTACGAGCTTCTTGCTGGAGAACGACGTTTACGTGCATCAAAGCTGGCAAATCTTGATAAGATTCCAGCGATTATTCGT
TCTTATTCTGATAATGACATGATGGTGCTTTCTATTTTAGAAAACTTACAACGCGATGATATGAGTCCATTAGACGAAGC
TGAAAGCATCAAGAAAATTATAGAGAAAAGTTCAATGACTCATGATGAAGTCGCTAAGCATCTCGGCAAATCTCGCTCTT
ACATTTCTAACCTCCTGCGAATTTTGAAACTTCCTCAAGAAATACTTCTTCTATTAGAAGAAAAAAAAATTAGTTTGGCT
CACGCTCGGACACTTCTTGCTGAAGAAAATAAAGAAAAGCAAGTTTTCTTAGCTCACAAGACCATTCAAGAAAAACTTAA
TGTCCGTCAACTTGAAGATCTTATTTACCAAAAAGATTCAAATAAAAAAATCAGTAACAAAAAAAGTATTTATATAGTAG
AAAAGGAAAAAGAACTTACAAAATGTTTAGGTATAAGTAATAAAATTTCATATAATGAAAAGCTTCAAAAAGGAAAGCTT
GAATTGTACTTTGAAAGTCTAGAAAAACTCGAAGAACTACTGAATAAACTCACAAAAAATTCACAGTAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-195)

ParB/Sulfiredoxin domain (ParB_N)

(8-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.612

98.473

0.489