Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VNN48_RS06390 Genome accession   NZ_CP141723
Coordinates   1318893..1319936 (-) Length   347 a.a.
NCBI ID   WP_017369505.1    Uniprot ID   A0A9X4SGW0
Organism   Lactococcus formosensis strain PAQ-208     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1313893..1324936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS06375 (VNN48_06370) rpsB 1313925..1314698 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  VNN48_RS06380 (VNN48_06375) - 1314973..1316013 (+) 1041 WP_017369503.1 lactonase family protein -
  VNN48_RS06385 (VNN48_06380) adhE 1316168..1318861 (+) 2694 WP_017369504.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  VNN48_RS06390 (VNN48_06385) sepM 1318893..1319936 (-) 1044 WP_017369505.1 SepM family pheromone-processing serine protease Regulator
  VNN48_RS06395 (VNN48_06390) coaD 1319926..1320423 (-) 498 WP_407280890.1 pantetheine-phosphate adenylyltransferase -
  VNN48_RS06400 (VNN48_06395) rsmD 1320413..1320952 (-) 540 WP_407280892.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VNN48_RS06405 (VNN48_06400) - 1321060..1322406 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37765.96 Da        Isoelectric Point: 6.5059

>NTDB_id=918930 VNN48_RS06390 WP_017369505.1 1318893..1319936(-) (sepM) [Lactococcus formosensis strain PAQ-208]
MKNEKIKKHKKLKLFFAVALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNQQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGRTFKSSTEMIDYVSQQKVGDSVTINYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPEVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNSDMKIVPVKTIQDAIDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=918930 VNN48_RS06390 WP_017369505.1 1318893..1319936(-) (sepM) [Lactococcus formosensis strain PAQ-208]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCGTCGCGCTACCGCTTCTTATTGTAGTGGG
GTTGTTCTTCCCCTTACCTTACTATATCGAGCAACCAGGAGGAACGATTCCAGTTAACCAAATGGTTGATGTCGCCGGGA
AAAAAGATGAGCATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGTGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCTACTGTTGTGAGTAGTGAAGAGATGACAGGCGGGATGACCAACCAGCAATTTGATTTGGTTAA
TCAGTTCTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTAGCAGGGAAGCCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCGACATTTAAAAATGACTTACAACTTTCGGATACGATAACAGCA
GTTAATGGTCGTACTTTCAAATCTTCAACTGAAATGATTGACTATGTGTCTCAACAAAAAGTTGGGGATAGCGTTACTAT
CAATTATACACGCGTAGATGGCAGTAATCATGAAGCCACAGGGAAGTATATTAAGCTGAGTAATGGTAAGACCGGAATTG
GTATTGGTTTAGTAGACCACACACAAGTTGTGACAGACCCTGAAGTTAAAATTGATGCCGGAAGTATTGGCGGACCGAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATTACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACTATCAATGAGGATGGCAGCATTGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGTAATGCGGGTG
CAAAAATTTTCCTCTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATTCAGATATGAAAATCGTACCTGTAAAGACGATTCAAGATGCAATAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(231-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.415

100

0.484