Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OC193_RS14470 Genome accession   NZ_AP025476
Coordinates   3209624..3210628 (+) Length   334 a.a.
NCBI ID   WP_048659182.1    Uniprot ID   -
Organism   Vibrio crassostreae strain LMG 22240     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204624..3215628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS14455 - 3205008..3206297 (-) 1290 WP_048663011.1 malic enzyme-like NAD(P)-binding protein -
  OC193_RS14460 rpmE 3206632..3206850 (-) 219 WP_004737142.1 50S ribosomal protein L31 -
  OC193_RS14465 priA 3207182..3209383 (+) 2202 WP_048663012.1 primosomal protein N' -
  OC193_RS14470 cytR 3209624..3210628 (+) 1005 WP_048659182.1 DNA-binding transcriptional regulator CytR Regulator
  OC193_RS14475 - 3210751..3211290 (+) 540 WP_029405385.1 SPOR domain-containing protein -
  OC193_RS14480 hslV 3211514..3212062 (+) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  OC193_RS14485 hslU 3212121..3213461 (+) 1341 WP_048605412.1 HslU--HslV peptidase ATPase subunit -
  OC193_RS14490 - 3213617..3214534 (+) 918 WP_048659183.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OC193_RS14495 rraA 3214608..3215126 (+) 519 WP_017071322.1 ribonuclease E activity regulator RraA -
  OC193_RS14500 zapB 3215237..3215479 (-) 243 WP_008219652.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36531.05 Da        Isoelectric Point: 6.4911

>NTDB_id=91892 OC193_RS14470 WP_048659182.1 3209624..3210628(+) (cytR) [Vibrio crassostreae strain LMG 22240]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=91892 OC193_RS14470 WP_048659182.1 3209624..3210628(+) (cytR) [Vibrio crassostreae strain LMG 22240]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAGAA
AGTCTCAGTTTCGACTCGTAAACGAGTGGAAACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTTGTCTTACTGGGTGATAGCGGCCAACAAAAGAAGCGTGAGTCTTCGTT
TGTTAACTTAGTTTTCACCAAACAAGCTGACGGTATGCTATTGCTTGGCACTGACCATCCATTTGACGTCAGTAAGTCTG
AACAAAAGAACTTACCACCAATGGTGATGGCGTGTGAGTTTGCCCCTGAACTTGAACTTCCTACCGTACACATCGATAAC
CTGACCTCTGCATTTGAAGCCGTGAACTACCTAGCCCAGTTAGGTCATAAGCGTATCGCTCAAATATCAGGGCCAGTATC
GGCAACGCTGTGTAAGTTCCGCCAACAAGGCTATCAACAAGCGCTGCGTCGCGCTGGAGTATCAATGAACCCTGCCTATA
GCACTGTCGGCGACTTTACTTTTGAAGCCGGTGCTCAAGCGGTTCGTCAATTGTTGGCACTTCCTGAACAGCCTACAGCT
ATCTTCTGTCATAACGACGCGATGGCCATTGGCGCGATTCAAGAAGCGAAGAAGCTGGGCTTACGCGTTCCTCAAGACCT
ATCGATTGTCGGCTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACTACCATTTCTCAGCCTCGCTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTACTGAAAGGCAACGATGTGCAAGCAGGTTCTCGTCTGCTTGAA
GCTAAATTAGTGGTTCGAGGCAGTACAGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.458

99.401

0.889
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.701

0.871

Multiple sequence alignment