Detailed information NTG0918912

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VNN39_RS05495
• Genome accession: NZ_CP141721
• Coordinates: 1116288..1118534 (+)
• Length: 748 a.a.
• NCBI ID: WP_338996932.1
• Uniprot ID: -
• Organism: Lactococcus formosensis strain M04020401 EE5e5
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1111288..1123534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN39_RS05480 (VNN39_05480)	dnaG	1112766..1114652 (+)	1887	WP_339006950.1	DNA primase	-
VNN39_RS05485 (VNN39_05485)	-	1114688..1114831 (+)	144	Protein_1025	translation initiation factor IF-2 N-terminal domain-containing protein	-
VNN39_RS05490 (VNN39_05490)	rpoD	1114946..1116070 (+)	1125	WP_306723678.1	RNA polymerase sigma factor RpoD	-
VNN39_RS05495 (VNN39_05495)	clpC	1116288..1118534 (+)	2247	WP_338996932.1	AAA family ATPase	Regulator
VNN39_RS05500 (VNN39_05500)	yqeK	1118590..1119177 (+)	588	WP_165713725.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
VNN39_RS05505 (VNN39_05505)	def	1119550..1120176 (-)	627	WP_017370260.1	peptide deformylase	-
VNN39_RS05510 (VNN39_05510)	-	1120280..1120735 (+)	456	WP_338996935.1	RNA pyrophosphohydrolase	-
VNN39_RS05515 (VNN39_05515)	uvrB	1120732..1122720 (+)	1989	WP_338996937.1	excinuclease ABC subunit UvrB	-
VNN39_RS05520 (VNN39_05520)	fabZ	1122748..1123206 (-)	459	WP_003134189.1	3-hydroxyacyl-ACP dehydratase FabZ	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 83486.42 Da
• Isoelectric Point: 4.7203

>NTDB_id=918912 VNN39_RS05495 WP_338996932.1 1116288..1118534(+) (clpC) [Lactococcus formosensis strain M04020401 EE5e5]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGSQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGDGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNTQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYRELLADL
VDDKIVIVNKPEEVKDTADTSDNEDEEK

Nucleotide

• Length: 2247 bp

>NTDB_id=918912 VNN39_RS05495 WP_338996932.1 1116288..1118534(+) (clpC) [Lactococcus formosensis strain M04020401 EE5e5]
ATGCTCTGCCAAAATTGTAAAATAAATGAAGCGACAATTCACCTTTATACGAATGTGAATGGACAACGTAAGCAAGTGGA
TTTATGCCAAAATTGCTATCAAATTATGAAATCAGGAGGTCAAGAAAGCTTGTTTGCTGGGGCGACAAATATTTCTAATA
ATGATGACCCATTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGACGGACAATGACACCTCCA
ACACAAGCTGGAGGTCGAGGTCCAGGAGGTCCACAAAACCCTCGTGGAAGTCAAGCACCTAAAGGACTTCTTGAAGAATT
CGGAGTCAACATTACTGATGCCGCACGCCGTGGAGAAATTGATCCTGTTATTGGGCGAGATTCTGAAATTACACGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCAGGTGTTGGTAAAACAGCAGTTGTTGAA
GGGTTAGCCCAAAAAATCGTTGATGGTGATGTACCACAAAAATTGCAAAATAAAGAAGTTATACGTCTTGATGTTGTTAG
CCTCGTCCAAGGTACTGGTGTACGTGGGCAATTTGAAGAACGTATGCAAAAGCTGATGGAAGAGATTCGTAAACGCGATG
ATGTTATCCTCTTCATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCAGCAGGTGATGGCAATATGGATGCAGGAAAT
ATTCTAAAACCAGCTTTGGCGCGTGGTGAACTACAACTTGTTGGGGCAACAACACTCAATGAATATAGAATTATCGAAAA
AGACGCGGCACTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCCTCTGTAGATGAGACCATCACGATTTTACGTG
GGATTCAAAAACGCTATGAAGACTATCATCATGTGAAATATTCAGATGAAGCAATCTTAGCTGCGGCGAATCTCTCGAAC
CGTTATATACAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTACTGGATGAAGCGGGTTCGAAAAAGAATCTTACCCT
CAAATTTGTTGATCCAGAGGATATCAAGAAACGTATTGAGCAAGCAGAAGTACAAAAAAATGAAGCAATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGGGAGCTTCAAAGTCATGAGATTTCAGATACAGAT
ATGCCAAATATCACAGAAAAAGATATAGAAGCAATCGTTGAAGAAAAAACACATATTCCTGTGGGTGATCTGAAAGAAAA
AGAGCAAACACAGCTAATCAATTTGGCTGAGGACTTGAAAGAACACGTTATTGGACAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCACGTGTCGGACTTGGAAAACCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGTAAGACTGAACTCGCTAAACAATTAGCTTATGAGCTCTTTGGCTCAAGAGATAGTATGATCCGCTTTGATAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCGCCTCCAGGATATGTAGGGTACGAGGAAGCAGGTC
AGCTGACAGAACGTGTCCGCCGTAACCCGTACAGCTTAATTTTATTGGATGAGATTGAGAAAGCACACCCTGATGTAATG
CATATGTTCTTGCAGATTCTTGATGACGGGCGTTTGACAGATGCACAAGGGCGCACAGTTTCCTTCAAAGATGCAATCAT
CATTATGACCTCAAATGCGGGGACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGTCGTACAAATT
CAGTGCTTGGGGAACTCGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAATTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTCAATACTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGACCTGGGTTATGATCCGAAAATGGGAGCACGCCCATTGCGTCGTA
CCATCCAAGATAATATCGAGGACGCTATTGCAGATTTTTACATTGAGCATCCTGAGTATAGAGAGTTACTTGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAGGACACAGCGGATACATCTGATAATGAAGATGAAGA
GAAATAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (640-710)

• AAA lid domain (AAA_lid_9) (284-383)

• ATPase family associated with various cellular activities (AAA) (AAA) (146-265)

• AAA domain (Cdc48 subfamily) (AAA_2) (469-634)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	86.497	100	0.865
clpE	Streptococcus mutans UA159	77.543	100	0.785
clpE	Streptococcus pneumoniae TIGR4	77.702	97.727	0.759
clpE	Streptococcus pneumoniae Rx1	77.702	97.727	0.759
clpE	Streptococcus pneumoniae D39	77.702	97.727	0.759
clpE	Streptococcus pneumoniae R6	77.702	97.727	0.759
clpC	Bacillus subtilis subsp. subtilis str. 168	51.944	85.963	0.447
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.961	81.952	0.393
clpC	Streptococcus pneumoniae Rx1	47.097	82.888	0.39
clpC	Streptococcus pneumoniae D39	47.097	82.888	0.39
clpC	Streptococcus pneumoniae TIGR4	46.935	82.888	0.389
clpC	Streptococcus mutans UA159	46.688	82.754	0.386
clpC	Streptococcus thermophilus LMD-9	46.006	83.69	0.385
clpC	Streptococcus thermophilus LMG 18311	45.645	82.888	0.378