Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   VNN39_RS03500 Genome accession   NZ_CP141721
Coordinates   714739..715527 (-) Length   262 a.a.
NCBI ID   WP_338997871.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M04020401 EE5e5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 709739..720527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN39_RS03490 (VNN39_03490) dnaN 711819..712961 (-) 1143 WP_338997870.1 DNA polymerase III subunit beta -
  VNN39_RS03495 (VNN39_03495) dnaA 713125..714483 (-) 1359 WP_017370087.1 chromosomal replication initiator protein DnaA -
  VNN39_RS03500 (VNN39_03500) spo0J 714739..715527 (-) 789 WP_338997871.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 30407.23 Da        Isoelectric Point: 9.4576

>NTDB_id=918900 VNN39_RS03500 WP_338997871.1 714739..715527(-) (spo0J) [Lactococcus formosensis strain M04020401 EE5e5]
MEEKIYQLNIEDISKNPYQPRRNFDSDKLNELSHSIEVNGVLQPIIVRKSNLFGYELLAGERRLRASKLANLDKIPAIIR
SYSDNDMMVLSILENLQRDDMSPLDEAESIKKIIEKSSMTHDEVAKHLGKSRSYISNLLRILKLPQEILLLLEGKKISLA
HARTLLAEENKEKQVFLAHKTIQEKLNVRQLEDLIYQKDSNKKISNKKSIYIVEKEKELTKCLGISNKISYNEKLQKGKL
ELYFESLEKLEELLNKLTKNSQ

Nucleotide


Download         Length: 789 bp        

>NTDB_id=918900 VNN39_RS03500 WP_338997871.1 714739..715527(-) (spo0J) [Lactococcus formosensis strain M04020401 EE5e5]
ATGGAAGAAAAAATTTATCAACTAAATATAGAAGATATTAGTAAAAACCCTTATCAACCACGTAGAAATTTTGATAGTGA
TAAATTAAATGAATTATCGCACTCTATAGAAGTTAATGGTGTACTTCAACCTATTATTGTTCGTAAAAGTAATCTCTTTG
GCTACGAGCTTCTTGCTGGAGAACGACGTTTACGTGCATCAAAGCTGGCAAATCTTGATAAGATTCCAGCGATTATTCGT
TCTTATTCTGATAATGACATGATGGTGCTTTCTATTTTAGAAAACTTACAACGCGATGATATGAGTCCATTAGACGAAGC
TGAAAGCATCAAGAAAATTATAGAGAAAAGTTCAATGACTCATGATGAAGTCGCTAAGCATCTCGGCAAATCTCGCTCTT
ACATTTCTAATCTCCTGCGAATTTTGAAACTTCCTCAAGAAATACTTCTTCTATTAGAAGGAAAAAAAATTAGTTTGGCT
CACGCTCGGACACTTCTTGCTGAAGAAAATAAAGAAAAGCAAGTTTTCTTAGCTCACAAGACCATTCAAGAAAAACTTAA
TGTCCGTCAACTTGAAGATCTTATTTACCAAAAAGATTCAAATAAAAAAATCAGTAACAAAAAAAGTATTTATATAGTAG
AAAAGGAAAAAGAACTTACAAAATGTTTAGGTATAAGTAATAAAATTTCATATAATGAAAAGCTTCAAAAGGGAAAACTT
GAATTGTACTTTGAAAGTCTAGAAAAACTCGAAGAACTACTGAATAAACTCACAAAAAATTCACAGTAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-195)

ParB/Sulfiredoxin domain (ParB_N)

(8-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.225

98.473

0.485