Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VNN39_RS01195 Genome accession   NZ_CP141721
Coordinates   240039..241844 (-) Length   601 a.a.
NCBI ID   WP_213495450.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M04020401 EE5e5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 235039..246844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN39_RS01180 (VNN39_01180) alaS 235483..238101 (-) 2619 WP_338997716.1 alanine--tRNA ligase -
  VNN39_RS01185 (VNN39_01185) - 238350..239258 (-) 909 WP_339007155.1 peptidyl-prolyl cis-trans isomerase -
  VNN39_RS01190 (VNN39_01190) - 239356..240039 (-) 684 WP_165713194.1 O-methyltransferase -
  VNN39_RS01195 (VNN39_01195) pepF 240039..241844 (-) 1806 WP_213495450.1 oligoendopeptidase F Regulator
  VNN39_RS01200 (VNN39_01200) coiA 241828..242832 (-) 1005 WP_338997718.1 competence protein CoiA family protein Machinery gene
  VNN39_RS01205 (VNN39_01205) - 242907..244007 (-) 1101 WP_165713191.1 YdcF family protein -
  VNN39_RS01210 (VNN39_01210) - 244085..245506 (-) 1422 WP_017368901.1 NCS2 family permease -
  VNN39_RS01215 (VNN39_01215) - 245869..246693 (+) 825 WP_213495453.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69856.29 Da        Isoelectric Point: 4.5653

>NTDB_id=918874 VNN39_RS01195 WP_213495450.1 240039..241844(-) (pepF) [Lactococcus formosensis strain M04020401 EE5e5]
MAKKRDEIAENLTWDLSTVFENDVAWELELKSVSEKLETVNRYEGHLLESAQSLLEITEVELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEARATNLYAKFGEMFAFYEPEFLALTPERYESFRREEPKLEQYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKDRHVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKTRGYDSARQAALSSNFIPEEVYDRLLESVNKYLPLLHRYIKLREQILGLDDDLKMYDVYTPLSDLDYKFNYPEAV
EKAEEVLQVFGPEYAAHVKKAFDERWIDVAENIGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAETTDEKERFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYGLPALENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEAIVNGGSEAREKYLTYLKAGSSDYP
LAVIAQAGVDMEEITYLESAFAVFEKRLIELENLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=918874 VNN39_RS01195 WP_213495450.1 240039..241844(-) (pepF) [Lactococcus formosensis strain M04020401 EE5e5]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACCGTATTTGAAAATGATGTCGCCTGGGA
ACTTGAACTTAAAAGTGTCTCGGAAAAGTTAGAGACGGTAAACCGCTACGAAGGACATCTTTTAGAGAGTGCTCAAAGCT
TATTAGAAATCACGGAAGTTGAGCTAGAGATTTCGCGCGCTGTGGAAAAAGTTTATGTTTATGCTTCAATGAAGCATGAT
CAAGATACACAAGTGAGTCGTTACCAAGAATATGAAGCTAGGGCTACAAATTTATATGCTAAGTTTGGTGAAATGTTTGC
CTTTTATGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAGAGTTTTAGAAGAGAAGAGCCTAAGTTGGAACAGT
ATTCTCATATGTTTGAACGCCTTTTTGCTAAAAAAGAGCATATCTTAAGTCCAAAAGAGGAAAAACTGTTAGCCAGTGCC
AGTGAGATTTTTGGTGCAGCTGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACATGGTAATTATATCTCGCTCATGGAAAGTAAGGACCGTCATGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGACACGTGGGTATGATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAGGCTTTTGGAGTCGGTTAATAAATATTTGCCTCTTTTACATCGCTATATCAAATTACGCGAGCAAATTTTAGGTT
TAGATGATGATTTGAAGATGTATGATGTCTACACCCCCTTATCTGACTTGGATTATAAGTTTAACTATCCAGAAGCAGTA
GAGAAAGCAGAAGAAGTTCTTCAAGTTTTCGGCCCTGAGTATGCAGCACATGTTAAAAAAGCTTTTGATGAGCGTTGGAT
TGATGTAGCAGAAAATATTGGCAAACGTTCTGGCGCATACTCGGGAGGATGCTATGATACAAATGCCTTTATGCTCTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTTACCTTAGTTCATGAAATGGGACACAGTATGCATTCTACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGATTATCCAATCTTTCTTGCAGAAATTGCCTCAACAACCAATGAAAATATCTTGACGGA
AAGTTTACTTGCGGAGACGACAGATGAAAAAGAGCGTTTTGCCATTTTAAATCACTGGCTTGATGGCTTCCGGGGAACCG
TTTTTCGTCAAAGCCAATTTGCTGAATTTGAACATGAAATTCATAAAGCTGATCAAGAAGGAAAGGTCCTGACCAGTGAA
TTCATGAACCAGCTCTACGCAGGTCTTAATGAGAAGTATTATGGTTTGCCTGCTCTAGAAAATCCTGAAATTCAGTACGA
GTGGGCACGCATTCCGCATTTTTATTATAATTATTATGTTTTCCAATATGCAACAGGCTTTGCGGCAGCAACTTATCTTG
CAGAGGCTATCGTAAATGGTGGATCAGAAGCGCGTGAAAAATACCTCACTTATCTCAAAGCTGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTAGATATGGAAGAAATAACGTATTTAGAATCGGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTGGAAAATTTAGTCGAAAAAGGAGTCCATTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.892

100

0.649