Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VNN53_RS04155 Genome accession   NZ_CP141720
Coordinates   836158..837201 (+) Length   347 a.a.
NCBI ID   WP_338962819.1    Uniprot ID   -
Organism   Lactococcus garvieae strain CAHFS22OV20.5B5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 831158..842201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN53_RS04140 (VNN53_04140) - 833701..835047 (+) 1347 WP_003133148.1 glucose-6-phosphate isomerase -
  VNN53_RS04145 (VNN53_04145) rsmD 835142..835681 (+) 540 WP_014025494.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VNN53_RS04150 (VNN53_04150) coaD 835671..836168 (+) 498 WP_074751406.1 pantetheine-phosphate adenylyltransferase -
  VNN53_RS04155 (VNN53_04155) sepM 836158..837201 (+) 1044 WP_338962819.1 SepM family pheromone-processing serine protease Regulator
  VNN53_RS04160 (VNN53_04160) adhE 837232..839925 (-) 2694 WP_338962822.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  VNN53_RS04165 (VNN53_04165) - 840082..841122 (-) 1041 WP_042218960.1 lactonase family protein -
  VNN53_RS04170 (VNN53_04170) rpsB 841395..842168 (+) 774 WP_003133158.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37894.25 Da        Isoelectric Point: 6.9721

>NTDB_id=918857 VNN53_RS04155 WP_338962819.1 836158..837201(+) (sepM) [Lactococcus garvieae strain CAHFS22OV20.5B5]
MKNEKIKKHKKLKLFFGIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDEVTIKYTRMDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDCSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=918857 VNN53_RS04155 WP_338962819.1 836158..837201(+) (sepM) [Lactococcus garvieae strain CAHFS22OV20.5B5]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGGTATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTGTTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAATCAGATGGTCGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTACGGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACCAATCAGCAATTTGATTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAGAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATCACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGCCACACTTTCAAATCTTCAACTGAGATGATTGACTATGTGTCTCAACAAAAAGTTGGAGATGAGGTGACCAT
CAAGTACACACGGATGGATGGCAGCAACCATGAAGCCACAGGCAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GCATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCCGGAAGTATTGGCGGGCCAAGT
GCTGGGATGATGTTTACCTTGGAGATATATAGCCAAATCACAGGTAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAAGATTGCAGCATCGGGCAAATAGGTGGTGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGGCTTCTGGTACAACAAATAACTACACAGATGCACTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

49.28

100

0.493