Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VNN53_RS02740 Genome accession   NZ_CP141720
Coordinates   572755..574116 (-) Length   453 a.a.
NCBI ID   WP_338963061.1    Uniprot ID   -
Organism   Lactococcus garvieae strain CAHFS22OV20.5B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 567755..579116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN53_RS02720 (VNN53_02720) - 569056..569550 (+) 495 WP_014024197.1 GNAT family N-acetyltransferase -
  VNN53_RS02725 (VNN53_02725) ald 569584..570705 (-) 1122 WP_141921055.1 alanine dehydrogenase -
  VNN53_RS02730 (VNN53_02730) - 570893..571522 (-) 630 WP_003133780.1 pyridoxamine 5'-phosphate oxidase family protein -
  VNN53_RS02735 (VNN53_02735) - 571545..572621 (-) 1077 WP_023889408.1 PIN/TRAM domain-containing protein -
  VNN53_RS02740 (VNN53_02740) radA 572755..574116 (-) 1362 WP_338963061.1 DNA repair protein RadA Machinery gene
  VNN53_RS02750 (VNN53_02750) rplQ 574706..575086 (-) 381 WP_003133776.1 50S ribosomal protein L17 -
  VNN53_RS02755 (VNN53_02755) - 575102..576040 (-) 939 WP_003133775.1 DNA-directed RNA polymerase subunit alpha -
  VNN53_RS02760 (VNN53_02760) rpsK 576092..576475 (-) 384 WP_003133774.1 30S ribosomal protein S11 -
  VNN53_RS02765 (VNN53_02765) rpsM 576493..576858 (-) 366 WP_338962531.1 30S ribosomal protein S13 -
  VNN53_RS02770 (VNN53_02770) rpmJ 576876..576992 (-) 117 WP_014024193.1 50S ribosomal protein L36 -
  VNN53_RS02775 (VNN53_02775) infA 577046..577264 (-) 219 WP_003133772.1 translation initiation factor IF-1 -
  VNN53_RS02780 (VNN53_02780) - 577466..577909 (+) 444 WP_014024192.1 zinc-dependent MarR family transcriptional regulator -
  VNN53_RS02785 (VNN53_02785) - 577931..578653 (+) 723 WP_141921056.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49738.90 Da        Isoelectric Point: 4.8676

>NTDB_id=918846 VNN53_RS02740 WP_338963061.1 572755..574116(-) (radA) [Lactococcus garvieae strain CAHFS22OV20.5B5]
MAKKKSTFLCQECGYKSVKKLGRCPNCGAWGSFVEEVEVQEVKNQRVSLTGEHSKPMKLDQVELFDTPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDTDFYLYAETNMQSIRNEVE
RLQPDFLIVDSIQTIMTPEIQSTQGSVSQVREVTGELMQLAKANDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
QNTFRILRAVKNRFGSTNEIGIFEMQGNGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEEPTDARECFIGEIGLTGEIR
RVTRMEQRLNEASKLGFQKVYAPKNSLAGVDIPENLEVVGVTTLSECLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=918846 VNN53_RS02740 WP_338963061.1 572755..574116(-) (radA) [Lactococcus garvieae strain CAHFS22OV20.5B5]
ATAGCTAAAAAAAAATCAACATTTCTTTGCCAGGAATGTGGCTACAAATCAGTAAAAAAACTCGGACGTTGTCCCAATTG
TGGTGCTTGGGGTTCCTTTGTTGAAGAAGTAGAAGTCCAAGAGGTAAAAAATCAGAGAGTGAGTCTGACAGGCGAGCACT
CTAAACCCATGAAGTTAGATCAGGTTGAACTTTTCGATACACCGCGTGTGGAAACTGATCTGGATGAGTTTAACCGTGTG
CTTGGAGGCGGTGTCGTTCCAGGAAGTCTTGTCCTTATTGGGGGAGATCCTGGGATTGGTAAATCTACTCTACTGCTTCA
AGTATCTACGCAACTTGCTTCAAGAGGGCGTGTACTTTATGTCAGTGGAGAGGAGTCGGCTCAACAAATTAAGCTGCGTG
CCGAGCGTTTGGGCGACATCGATACAGATTTTTACCTTTACGCCGAAACCAATATGCAAAGCATCCGAAATGAAGTTGAA
CGTCTACAGCCAGACTTTCTTATTGTAGATTCGATTCAAACTATCATGACGCCTGAAATCCAGAGTACTCAGGGTTCGGT
TAGTCAGGTGCGCGAGGTGACAGGAGAATTAATGCAGTTGGCCAAAGCCAACGATATTGCGACCTTTATTGTCGGACATG
TCACTAAGGAAGGGCAACTTGCGGGGCCGCGTATGTTGGAACATATGGTTGATACGGTCTTGTATTTTGAGGGGGAACGT
CAAAATACATTCCGAATTTTACGCGCGGTCAAAAACCGTTTTGGTTCAACAAATGAAATTGGGATTTTCGAGATGCAGGG
CAATGGTTTAGTGGAAGTGACCAACCCGAGTGAAGTTTTCCTCGAAGAGCGTTTGGAAGGCTCTACGGGCTCTGCTATCG
TCTGTGCGTTAGAAGGTACGCGTCCGATATTGGTTGAGATTCAAGCTTTGACAACGCCAACCATGTTTGGAAATGCCAAA
CGTACAACCTCTGGTTTGGACTTTAACCGTGTGAGTTTAATCATGGCAGTACTCGAAAAGCGTGCCGGTTTTCTTTTGCA
ACAACAAGATGCCTACTTAAAATCTGCAGGTGGTGTCAAGTTGGATGAACCAGCCATTGACTTAGCAGTCGCTGTAGCTA
TTGCTTCTAGCTACAAGGAAGAGCCGACAGATGCACGTGAATGCTTTATTGGCGAAATTGGCTTGACGGGTGAAATTCGT
CGTGTTACGCGGATGGAGCAACGTCTCAATGAAGCAAGCAAATTAGGGTTCCAAAAAGTTTACGCGCCTAAGAATAGCTT
GGCAGGCGTAGACATTCCAGAAAATTTGGAAGTGGTCGGTGTGACGACTTTATCAGAATGTTTGAAAAAAGTATTTGGCT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

80.132

100

0.801
  radA Streptococcus pneumoniae D39

80.132

100

0.801
  radA Streptococcus pneumoniae R6

80.132

100

0.801
  radA Streptococcus pneumoniae TIGR4

80.132

100

0.801
  radA Streptococcus mitis NCTC 12261

80.132

100

0.801
  radA Streptococcus mitis SK321

80.132

100

0.801
  radA Bacillus subtilis subsp. subtilis str. 168

61.22

100

0.62