Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OC193_RS13040 Genome accession   NZ_AP025476
Coordinates   2946249..2946767 (-) Length   172 a.a.
NCBI ID   WP_019825850.1    Uniprot ID   -
Organism   Vibrio crassostreae strain LMG 22240     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2941249..2951767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS13015 rimM 2941326..2941880 (-) 555 WP_048615624.1 ribosome maturation factor RimM -
  OC193_RS13020 rpsP 2941905..2942153 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  OC193_RS13025 ffh 2942366..2943760 (-) 1395 WP_010435884.1 signal recognition particle protein -
  OC193_RS13030 - 2943961..2944755 (+) 795 WP_019825854.1 inner membrane protein YpjD -
  OC193_RS13035 - 2944883..2946154 (+) 1272 WP_048666338.1 HlyC/CorC family transporter -
  OC193_RS13040 luxS 2946249..2946767 (-) 519 WP_019825850.1 S-ribosylhomocysteine lyase Regulator
  OC193_RS13045 - 2946792..2947442 (-) 651 WP_017629422.1 hypothetical protein -
  OC193_RS13050 gshA 2947453..2949021 (-) 1569 WP_048664502.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18937.64 Da        Isoelectric Point: 4.4901

>NTDB_id=91879 OC193_RS13040 WP_019825850.1 2946249..2946767(-) (luxS) [Vibrio crassostreae strain LMG 22240]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVESQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91879 OC193_RS13040 WP_019825850.1 2946249..2946767(-) (luxS) [Vibrio crassostreae strain LMG 22240]
ATGCCTTTATTAGATAGTTTCACTGTTGATCATACACGCATGAACGCACCGGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCACCTATACGCTGGTTTCATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATTTCACCG
ATGGGCTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTACAGAGCAACAAGTAGCTGACGGTTGGTTGGCAGC
GATGCAAGACGTACTGAAAGTTGAGAGCCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACCGCAGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCGAATGCGATCATCGCTGCAGGCATCTCTGTAAACAAGAATGATGAACTGGCA
CTGCCAGAGTCTATGCTGCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.058

99.419

0.895

Multiple sequence alignment