Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VNN46_RS01165 Genome accession   NZ_CP141719
Coordinates   237091..238896 (-) Length   601 a.a.
NCBI ID   WP_338962055.1    Uniprot ID   -
Organism   Lactococcus garvieae strain CAHFS22LA20.5H7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 232091..243896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN46_RS01150 (VNN46_01150) alaS 232533..235151 (-) 2619 WP_338962050.1 alanine--tRNA ligase -
  VNN46_RS01155 (VNN46_01155) - 235402..236310 (-) 909 WP_265150336.1 peptidyl-prolyl cis-trans isomerase -
  VNN46_RS01160 (VNN46_01160) - 236408..237091 (-) 684 WP_004258974.1 O-methyltransferase -
  VNN46_RS01165 (VNN46_01165) pepF 237091..238896 (-) 1806 WP_338962055.1 oligoendopeptidase F Regulator
  VNN46_RS01170 (VNN46_01170) coiA 238880..239884 (-) 1005 WP_338962058.1 competence protein CoiA family protein Machinery gene
  VNN46_RS01175 (VNN46_01175) - 239959..241059 (-) 1101 WP_338962060.1 YdcF family protein -
  VNN46_RS01180 (VNN46_01180) - 241136..242557 (-) 1422 WP_014024380.1 NCS2 family permease -
  VNN46_RS01185 (VNN46_01185) - 242914..243738 (+) 825 WP_014024379.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69837.38 Da        Isoelectric Point: 4.7327

>NTDB_id=918784 VNN46_RS01165 WP_338962055.1 237091..238896(-) (pepF) [Lactococcus garvieae strain CAHFS22LA20.5H7]
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSEKLETVNAYEGHLLDSAQSLLEITEIELEISRAVEKVYVYASMKHD
QDTQVSLYQEYEAKATNLYAKFGESFAFYEPEFLALTPERYESFRREEPKLERYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERKVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLPLLHRYIKLREQILGLEDDLKMYDVYTPLSDLDYKFNYPEAV
EKAQEVLQIWGPEYAHHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAASTDEKVRFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYADLNEKYYGLPARENSEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEAIVNGGTDAREKYLTYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=918784 VNN46_RS01165 WP_338962055.1 237091..238896(-) (pepF) [Lactococcus garvieae strain CAHFS22LA20.5H7]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGAGTTTCGGAAAAATTAGAGACGGTAAACGCCTATGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATTGAGCTAGAAATCTCGCGTGCTGTGGAAAAGGTTTATGTCTATGCCTCAATGAAGCATGAC
CAAGATACGCAAGTGAGCCTTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGTTTGGTGAAAGCTTTGC
TTTTTATGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAAAGTTTTAGAAGAGAAGAACCTAAACTGGAACGCT
ATTCCCATATGTTTGAACGCCTTTTTGCTAAAAAGGAGCATATTTTAAGTCCAAAAGAGGAAAAACTTTTAGCCAGTGCG
AGTGAGATTTTTGGTGCTGCGGCCGAAACCTTTGAAATTTTTGACAATGCTGATATTGAACTTCCGATGATAAAAGATGA
AAAAGGACAGGAAGTACAGCTGACACATGGCAATTATATCTCGCTCATGGAAAGTAAGGAGCGTAAGGTACGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAACACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCAAAGATGCGGGGCTACCATTCAGCTCGTCAGGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTCTA
CGATAAGCTCCTAGAGTCTGTCAATAAATATTTGCCTCTTTTACATCGCTATATTAAATTGCGTGAACAGATTTTAGGCT
TAGAGGACGATTTAAAGATGTATGATGTTTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACCCCGAGGCAGTA
GAGAAAGCCCAAGAAGTTCTTCAAATTTGGGGGCCTGAATACGCGCACCATGTAAAAAAAGCTTTTGAGGAGCGTTGGAT
TGATGTGGCTGAAAATAGCGGTAAACGTTCGGGTGCTTACTCAGGTGGATGCTATGATACAAATGCTTTTATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGTCACAGTATGCATTCCACATTTACACGGGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGCGTCGACAGATGAAAAAGTGCGTTTTGCTATTTTAAACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTTCGTCAAAGTCAATTTGCTGAATTTGAACATGAAATACATAAAGCTGATCAAGAAGGAAAAGTTTTGACCAGTGAA
TTCATGAACCAACTTTATGCAGATCTTAATGAAAAATACTACGGTTTACCCGCCCGGGAAAATTCTGAAATTCAGTATGA
GTGGGCCCGCATTCCGCACTTCTATTACAACTATTATGTCTTCCAATATGCTACTGGCTTTGCCGCAGCAACTTATCTTG
CTGAGGCTATCGTTAATGGTGGGACAGATGCGCGTGAAAAATACCTCACTTATCTCAAAGCCGGATCAAGTGATTATCCC
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.058

100

0.651