Detailed information NTG0091873

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OC193_RS12770
• Genome accession: NZ_AP025476
• Coordinates: 2876249..2879638 (+)
• Length: 1129 a.a.
• NCBI ID: WP_048664525.1
• Uniprot ID: -
• Organism: Vibrio crassostreae strain LMG 22240
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2871249..2884638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OC193_RS12750	erpA	2871537..2871878 (-)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-
OC193_RS12755	hemL	2872175..2873470 (+)	1296	WP_048605689.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OC193_RS12760	-	2873814..2874899 (+)	1086	WP_048658169.1	AI-2E family transporter	-
OC193_RS12765	rsmC	2875010..2876032 (+)	1023	WP_048658170.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OC193_RS12770	chiS	2876249..2879638 (+)	3390	WP_048664525.1	response regulator	Regulator
OC193_RS12775	-	2880350..2882032 (+)	1683	WP_017056650.1	ABC transporter substrate-binding protein	-
OC193_RS12780	-	2882202..2883188 (+)	987	WP_017633262.1	ABC transporter permease	-
OC193_RS12785	-	2883191..2884216 (+)	1026	WP_017056648.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127158.73 Da
• Isoelectric Point: 5.2600

>NTDB_id=91873 OC193_RS12770 WP_048664525.1 2876249..2879638(+) (chiS) [Vibrio crassostreae strain LMG 22240]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESSSFIGSERYRLLHKRYHNAYLELLKRSDF
DDILLVDINGNVAYSVFKNDDYGTNLLTGKYKDSNLGVTFQRLAKDVTDHRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNTLDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVVVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIKNQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDAS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQDELDSYNESGHYSHFQAPDLIDNSQQENSVISENP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRINNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=91873 OC193_RS12770 WP_048664525.1 2876249..2879638(+) (chiS) [Vibrio crassostreae strain LMG 22240]
ATGTTTAGATTTTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACCCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTTATCGCGATCTTTTTCCTTCAATCGCACAGTCAGGACCTTCAGGAACAAAGCACCTCACACCTTGTTT
CAGTCCGTGATACTAAGCAGCAACAGATTGTCGACTACCTACAAGCTCAAGAATCCCAAGTGATGGGCTTTGTTCGCTCT
GAACTAGCCAATGCCAGTGGCGGCCGATTCTATGGTTTGATCAATGCATTCCAACGTCTAGGGTTAGATATTGACGAAGC
ACGCAGTAATGCGCAGCAACGCTACATTCAAGGATCGGGCGATCAAATCAAAACATCGATTCTTCCTGAATCCAGTAGCT
TCATTGGCAGTGAGCGTTACCGCCTACTGCACAAGCGCTACCATAACGCTTACCTAGAGTTGCTTAAACGCTCCGATTTT
GACGATATTCTATTGGTTGATATCAACGGTAACGTTGCTTACTCCGTCTTTAAAAATGACGATTACGGCACTAACTTGCT
GACAGGTAAATACAAAGATTCAAACCTAGGCGTTACCTTTCAACGGCTCGCTAAAGATGTCACCGATCACCGTAAGTCTA
ATGAGGATTACACGCCTGTTATTGTGTCGGACTTTAAAGACGAGAACGGTAAACAGACCGCATGGCTAGGTGCACCTATC
GTTCAACAGGGCTACCTACACAGTTACGCGATGTTTAGATTACCTATCAACGGCATTACTAAGCTGATTGCGGATCTCAA
CAAGAGTTCGAATATTCAAACTCTGCTTGTAGGTGATGATCACCTGCCGCGTAGCCTTGCTCATTCACAAGAATCTATCA
ACTTGAGCTTAGATGTTGTCGATAAAGCATTGGCTGGCGAAACAGCGGTTGGCACCTTCGACAACACCCTAGATCAAGCG
ATCATCGCAGCATATACACCAATTGAGCTGAAATACGCAACATGGGCTCTTGTCGTAGAGCTGCCAGAAAAAGAGGCGTT
TGCTCGTATTCATCAGTTAGAAAAGATCTTCGTGATCGTGATGCTAACGGCGATCATTCTGGTAGTCGTTGCATCGCACT
ATCTGTCTAACTTCATCACATCCCCACTACTCAAACTGACGTGGGCTGCCGAGAAAGTATCTGCGGGTGATCTCGATGAA
ACCATGATCAATACCGAACGCAAAGATGAAATAGGCCGACTCGCGGTGAGCTTCGAGAGAATGCAGCGCTCGATTCGTGA
AAAAATGCAGCTCATCAAAAACCAAAACGATGAACTTGAAGACAACCTTAAGACAATCCAGAAGCAAAACGAAGAGTTGC
AACTGGCGAACAAACTCAAAGATGAGTTCCTAGCTACTACTTCACACGAATTGAGAACACCACTACATGGCATGGTGGGT
ATTGCTGAAGCGCTGATATCCGGTGCGAACGGCCCCATCCCTGCTAACCAGAAGTATCAATTGGATATCATCATCAATAG
CGGTCAGCGATTAGCAACCTTGGTTGATGATCTACTTGATTACCACAAAATGCGCTATGGCAGCTTAGACATTAAGAAGT
CAGCTGTTGATTTGTCTGCTGCCACCAGCTTGGTATTAGAGCTATCTCATCACCTGTTAGGTAACAAGCCAATCCGCATC
ATTAACCAAGTCCCAAGTGATTTAGGGCTGGTTTCATCGGATCCTCAACGACTTGAGCAAGTGATGTATAACTTGGTCGG
CAATGCCATCAAGTACACCTCAGAAGGTAAGATCGTTATCTCTGCCAGCGTTATCGATGACAACATTCGTGTACAAGTTG
TCGATACAGGCCAAGGTATACCGGCCGAGTACCTTGAGCACATCTTTGAACCATTGATTCAAGCAGGCCAAGATGCGAGT
AACTACCGCCAAGGTGCAGGGCTTGGATTATCGATCAGTCGTCAGTTGATCGAGCTAATGGGCGGTTCACTGTACGTAAG
TAGCCAACCAATGCTTGGCACTACGTTTAGCTTTACCCTGCCCCTAGCTACTCAAGATGAGCTGGACAGTTACAACGAAT
CTGGTCATTACTCGCACTTCCAAGCGCCCGATTTAATAGATAACAGCCAACAAGAAAACAGTGTTATCAGTGAAAACCCA
GATGGCCCGTTACTGGTTATCGCCGATGATGAGCCGGTTAACCTGCGAGTATTAGACAGCTTCTTGAAGTTAGAAGGTTA
TCGAGTACGTACTGCATGTGACGGTCCGGAAACCATTGAACTGATTGAAAAAGAGAAGCCAGAGCTGCTTCTGCTCGATA
TCATGATGCCAGGTATGAGCGGCTATCAGGTTTGTGAAGCTCTGAGAAAGCAATATGACCATGCTCAATTGCCAATAATC
ATGCTAACGGCACTCAACCAGGCAGAAGACCGTGTTCGAGGTTTCGAAGCAGGTGCCAATGACTACTTGTCTAAACCGTT
CAACAAACAAGAACTGGCGGCTCGAATTACAGCGCATCTATCAGCAAGTAAAGCTGAACAGAGACGCCTTGAAAATGACC
AACTGCAACTCGAGCTCAAACACAGAGCTATGGTTGAAGCTAACTTGTTAGAAACTCAAGGGCGCTTATTAGAGCAACTA
GAATCGGCACCTGAAGCCATCATCTGTATTCGTGATGACCAACGTATTCGCTTTGCCAACGAAGCGGCGGCAAAACTATT
CAGACGCGGACAGGAACAACTTAAGCGCTCTATGGCCGACGAGATCATTGCACCTAAATACCTTAAGGTGGAACAGGCGC
ACTATTGTGGTGATATCGACATCTATATTGACGATACCCGTCAGCGCATACCAAGTGACATCCTTAAGCTGCCAGAGGGT
TCTGGGCTCGACACCATGTATATCTTCAATGTCGGTGGTGGTGTTAACTCCAACCGAATCAATAACCTTGAAACAGCGGT
TGAAGCGCTTTCTAGTTATGCCTTTGAAGGTGATAAGGACAAACTGCAACAATTGAAAGAGCTTGGTGGTGAGTTTACGC
GTCTTGCTGATAAGGCAACCGGAGAAGGGAAAAACAAACAAGAGTTGATGCGTGAAGTACTGGTCGATGCGATGACAAAT
GCCATCATCTACTGGGAATCGGTGACTGGTGAAACCAAATTTGCTTTCGCAGAGAAAAGTGGTTTGTGGCGGGTCTACTT
AGACCGCAGTACGCTACAAACGCGAACGCTAGACAAATATCTACGCGTAGAAACGCTACCGAAAACGCCTCGCTGGCGAA
CGGTACTGAGCTCAATCGAATTCATACTGGAACACTGTAAAGAACAGACGCCAGAAAGGACGCATATTGAGATGCTAAGA
GATAAGCTACAGAAACTACTGACCAGTTAA

Domains

Predicted by InterproScan.

• PAS domain (PAS_8) (880-914)

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.528	100	0.765