Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OC193_RS07855 Genome accession   NZ_AP025476
Coordinates   1698394..1699908 (-) Length   504 a.a.
NCBI ID   WP_048666381.1    Uniprot ID   -
Organism   Vibrio crassostreae strain LMG 22240     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1693394..1704908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS07835 - 1693709..1694827 (-) 1119 WP_048665005.1 glycosyltransferase -
  OC193_RS07840 - 1694820..1695605 (-) 786 WP_048665006.1 DapH/DapD/GlmU-related protein -
  OC193_RS07845 - 1695699..1697072 (-) 1374 WP_048665007.1 O-antigen ligase family protein -
  OC193_RS07850 - 1697277..1698413 (-) 1137 WP_048665008.1 glycosyltransferase family 4 protein -
  OC193_RS07855 luxO 1698394..1699908 (-) 1515 WP_048666381.1 sigma-54 dependent transcriptional regulator Regulator
  OC193_RS07860 - 1700073..1700477 (-) 405 WP_048658705.1 Hpt domain-containing protein -
  OC193_RS07865 - 1700814..1702046 (-) 1233 WP_048665010.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  OC193_RS07870 - 1702039..1702938 (-) 900 WP_048658707.1 proline/glycine betaine ABC transporter permease -
  OC193_RS07875 - 1703099..1704091 (-) 993 WP_048658708.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 56435.57 Da        Isoelectric Point: 5.8245

>NTDB_id=91868 OC193_RS07855 WP_048666381.1 1698394..1699908(-) (luxO) [Vibrio crassostreae strain LMG 22240]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKTFIERHSPQLVILDLKLPDMPGEEVLDWISENDIPTAVIIA
TAHGSVNIAVDLIQRGAEDFLEKPIQADRLKTSVSLHLRRAKLENLVDNIQSKFDRDRFHNFIGSCLPMQAVYKIIDSVA
PTTASVFINGESGTGKEVCAEAIHQESQRGDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGNREIKVDVRIICATNRDPLVEVEEGRFREDLYYRVHVVPIEMPPLRERGSDI
VTLSNHFLKLYAKQDKKKFKSIDKETQALLKRYTWPGNVRQLQNIIRNIVVLNNETSVTKEMLPPPINKAESTKPKSVTP
IRNVAPVAANTPAPVAETKLPPITPEELEQTSAPQAQSEPMTPAFTTTEGAIRPMWQIEREAIQHAINHCDGNVLNAAVL
LELSPSTVYRKKQAWESEDEYNQA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=91868 OC193_RS07855 WP_048666381.1 1698394..1699908(-) (luxO) [Vibrio crassostreae strain LMG 22240]
ATGCGCCCTAAAGTATTGTTAGTTGAAGACTCCACCTCCCTCGCCGTACTGTACAAACAGTACGTTAAAGACGAGCCCTA
CGACATATTCCATGTCGAGACAGGTGCGGAAGCCAAAACATTTATTGAAAGACATTCTCCACAGCTGGTTATTCTAGATT
TGAAACTGCCCGACATGCCGGGAGAAGAAGTTTTGGATTGGATCAGCGAAAATGATATTCCAACGGCCGTTATCATCGCA
ACGGCGCACGGCTCGGTGAATATCGCCGTAGACCTCATTCAGCGCGGTGCGGAAGACTTTTTAGAAAAGCCCATTCAAGC
CGACCGTTTAAAAACGTCTGTGAGTTTGCATCTACGTAGAGCCAAGCTCGAAAACCTTGTCGACAACATTCAAAGCAAAT
TCGACCGCGACCGTTTTCATAACTTCATTGGTTCATGTTTACCAATGCAAGCCGTCTACAAGATTATTGATTCCGTCGCC
CCTACTACTGCTAGTGTATTCATCAATGGCGAAAGTGGTACTGGTAAAGAAGTGTGTGCTGAAGCCATCCACCAAGAGAG
CCAACGTGGTGACAAGCCTTTCATTGCCATTAACTGTGGTGCTATTCCTCGTGACTTGATGGAAAGTGAAATTTTCGGCC
ACGTTAAAGGTGCGTTTACCGGAGCGACAACAGACCGTAAAGGCGCAGCAATGCAAGCACACGGTGGCACACTGTTTCTC
GATGAACTTTGTGAAATGGAATTGGAGATGCAGAAAAAGCTTCTTAGATTCCTACAAACCGGTACTTTCACGCCACTGGG
CGGTAACCGTGAGATTAAAGTCGATGTCAGAATTATCTGTGCGACAAACCGAGATCCATTAGTCGAAGTGGAAGAAGGTC
GATTCCGTGAAGATCTCTACTACCGCGTACATGTAGTGCCTATCGAGATGCCACCATTACGTGAAAGAGGAAGTGACATT
GTCACTCTGTCAAATCACTTCTTGAAGCTGTACGCGAAACAAGACAAGAAGAAATTCAAATCTATCGACAAAGAAACTCA
AGCGCTTCTTAAACGCTACACGTGGCCAGGTAATGTTCGTCAATTGCAAAACATCATTCGTAACATCGTGGTGTTGAACA
ATGAAACGAGCGTAACCAAAGAGATGCTGCCTCCGCCGATTAATAAAGCAGAAAGCACAAAACCAAAGAGTGTCACACCG
ATACGAAACGTCGCGCCAGTAGCTGCTAACACCCCTGCTCCTGTAGCCGAAACTAAACTGCCACCTATCACACCTGAAGA
GTTGGAACAGACATCAGCACCTCAAGCTCAAAGCGAACCGATGACACCTGCGTTTACTACTACGGAAGGTGCTATTCGTC
CAATGTGGCAGATTGAACGTGAGGCCATTCAACATGCTATTAATCATTGCGATGGCAACGTGTTGAATGCGGCCGTGTTA
TTGGAGCTCAGCCCTTCTACGGTTTATCGTAAGAAACAGGCTTGGGAATCGGAAGATGAGTACAATCAAGCCTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Bacterial regulatory protein, Fis family (HTH_8)

(455-491)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.388

97.222

0.48

Multiple sequence alignment