Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VNN47_RS08225 Genome accession   NZ_CP141709
Coordinates   1596456..1597817 (+) Length   453 a.a.
NCBI ID   WP_080567145.1    Uniprot ID   -
Organism   Lactococcus garvieae strain VC13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1591456..1602817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN47_RS08180 (VNN47_08145) - 1591919..1592641 (-) 723 WP_003133770.1 metal ABC transporter ATP-binding protein -
  VNN47_RS08185 (VNN47_08150) - 1592663..1593106 (-) 444 WP_014024192.1 zinc-dependent MarR family transcriptional regulator -
  VNN47_RS08190 (VNN47_08155) infA 1593308..1593526 (+) 219 WP_003133772.1 translation initiation factor IF-1 -
  VNN47_RS08195 (VNN47_08160) rpmJ 1593580..1593696 (+) 117 WP_014024193.1 50S ribosomal protein L36 -
  VNN47_RS08200 (VNN47_08165) rpsM 1593714..1594079 (+) 366 WP_003133773.1 30S ribosomal protein S13 -
  VNN47_RS08205 (VNN47_08170) rpsK 1594097..1594480 (+) 384 WP_003133774.1 30S ribosomal protein S11 -
  VNN47_RS08210 (VNN47_08175) - 1594532..1595470 (+) 939 WP_003133775.1 DNA-directed RNA polymerase subunit alpha -
  VNN47_RS08215 (VNN47_08180) rplQ 1595486..1595866 (+) 381 WP_003133776.1 50S ribosomal protein L17 -
  VNN47_RS08225 (VNN47_08190) radA 1596456..1597817 (+) 1362 WP_080567145.1 DNA repair protein RadA Machinery gene
  VNN47_RS08230 (VNN47_08195) - 1597951..1599027 (+) 1077 WP_023889408.1 PIN/TRAM domain-containing protein -
  VNN47_RS08235 (VNN47_08200) - 1599050..1599679 (+) 630 WP_407350215.1 pyridoxamine 5'-phosphate oxidase family protein -
  VNN47_RS08240 (VNN47_08205) ald 1599867..1600988 (+) 1122 WP_141921055.1 alanine dehydrogenase -
  VNN47_RS08245 (VNN47_08210) - 1601021..1601515 (-) 495 WP_014024197.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49768.92 Da        Isoelectric Point: 4.8676

>NTDB_id=918671 VNN47_RS08225 WP_080567145.1 1596456..1597817(+) (radA) [Lactococcus garvieae strain VC13]
MAKKKSTFLCQECGYKSVKKLGRCPNCGAWGSFVEEVEVQEVKNQRVSLTGEHSKPMKLDQVELFDTPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDTDFYLYAETNMQSIRNEVE
RLQPDFLIVDSIQTIMTPEIQSTQGSVSQVREVTGELMQLAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
QNTFRILRAVKNRFGSTNEIGIFEMQGNGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEEPTDARECFIGEIGLTGEIR
RVTRMEQRLNEASKLGFQKVYAPKNSLAGVDIPENLEVVGVTTLSECLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=918671 VNN47_RS08225 WP_080567145.1 1596456..1597817(+) (radA) [Lactococcus garvieae strain VC13]
ATAGCTAAAAAAAAATCAACATTTCTTTGCCAGGAATGTGGCTACAAATCAGTAAAAAAACTCGGACGTTGTCCCAATTG
TGGTGCTTGGGGTTCCTTTGTTGAAGAAGTAGAAGTCCAAGAGGTAAAAAATCAGAGGGTGAGTCTGACAGGCGAGCACT
CTAAACCCATGAAGTTAGATCAGGTTGAACTTTTCGATACACCGCGTGTGGAAACTGATCTGGATGAGTTTAACCGCGTC
CTTGGAGGCGGTGTCGTTCCAGGAAGTCTTGTCCTTATTGGGGGGGATCCAGGGATTGGTAAATCTACTCTACTGCTTCA
AGTATCTACGCAACTTGCTTCAAGAGGGCGTGTGCTTTATGTCAGTGGCGAGGAGTCGGCTCAACAAATTAAGCTGCGTG
CCGAGCGTTTGGGCGACATCGATACAGATTTTTACCTTTACGCCGAAACCAATATGCAAAGCATCCGAAATGAAGTTGAA
CGTCTACAGCCAGACTTTCTTATTGTAGATTCGATTCAAACTATCATGACGCCTGAAATCCAGAGTACTCAGGGTTCGGT
TAGTCAGGTGCGCGAGGTGACAGGAGAATTAATGCAGTTGGCCAAAACCAACGATATTGCGACCTTTATTGTCGGACATG
TCACTAAGGAAGGGCAACTTGCGGGGCCGCGTATGTTGGAACACATGGTTGATACGGTCTTGTATTTTGAGGGAGAACGT
CAAAATACATTCCGAATTTTACGCGCGGTCAAAAACCGTTTTGGTTCAACAAATGAAATTGGGATTTTCGAGATGCAGGG
CAATGGTTTAGTGGAAGTGACCAACCCGAGTGAAGTTTTCCTTGAGGAGCGTTTGGAGGGCTCTACGGGCTCTGCTATCG
TCTGTGCGTTAGAAGGTACGCGTCCGATATTGGTTGAGATTCAAGCTTTAACAACGCCAACCATGTTTGGAAATGCCAAA
CGGACAACCTCTGGTTTGGACTTTAACCGTGTGAGTTTAATCATGGCAGTACTCGAAAAGCGTGCCGGTTTTCTTTTGCA
ACAACAAGATGCCTACTTAAAATCCGCAGGTGGTGTCAAGTTGGATGAACCAGCCATTGACTTAGCAGTCGCTGTAGCTA
TTGCTTCTAGCTACAAGGAAGAGCCGACAGATGCACGTGAATGCTTTATTGGCGAAATTGGCTTGACGGGTGAAATTCGT
CGTGTTACGCGGATGGAGCAACGTCTCAATGAAGCAAGCAAATTAGGGTTCCAAAAAGTTTACGCGCCTAAGAATAGCTT
GGCAGGCGTAGATATTCCAGAAAATTTGGAAGTGGTCGGTGTGACGACTTTATCAGAATGTTTGAAAAAAGTATTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

80.353

100

0.804
  radA Streptococcus pneumoniae D39

80.353

100

0.804
  radA Streptococcus pneumoniae R6

80.353

100

0.804
  radA Streptococcus pneumoniae TIGR4

80.353

100

0.804
  radA Streptococcus mitis NCTC 12261

80.353

100

0.804
  radA Streptococcus mitis SK321

80.353

100

0.804
  radA Bacillus subtilis subsp. subtilis str. 168

61.438

100

0.623