Detailed information NTG0091867

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OC193_RS06945
• Genome accession: NZ_AP025476
• Coordinates: 1523964..1525388 (-)
• Length: 474 a.a.
• NCBI ID: WP_048658505.1
• Uniprot ID: -
• Organism: Vibrio crassostreae strain LMG 22240
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1518964..1530388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OC193_RS06920	-	1519605..1520258 (+)	654	WP_048664860.1	thiopurine S-methyltransferase	-
OC193_RS06925	purT	1520371..1521546 (-)	1176	WP_048664861.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OC193_RS06930	cdd	1521714..1522601 (-)	888	WP_048664862.1	cytidine deaminase	-
OC193_RS06935	-	1522888..1523565 (-)	678	WP_017104495.1	LrgB family protein	-
OC193_RS06940	-	1523568..1523939 (-)	372	WP_017080643.1	CidA/LrgA family protein	-
OC193_RS06945	sbcB	1523964..1525388 (-)	1425	WP_048658505.1	exodeoxyribonuclease I	Machinery gene
OC193_RS06950	-	1526274..1526708 (+)	435	WP_048664863.1	DUF4402 domain-containing protein	-
OC193_RS06955	-	1526761..1527198 (+)	438	WP_004734872.1	DUF4402 domain-containing protein	-
OC193_RS06960	-	1527195..1527905 (+)	711	WP_048664864.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54763.11 Da
• Isoelectric Point: 4.8734

>NTDB_id=91867 OC193_RS06945 WP_048658505.1 1523964..1525388(-) (sbcB) [Vibrio crassostreae strain LMG 22240]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWVVPMAWHPTNQNAVIVVDLAKDPSPLLEMDADELRERLYTKRSELAEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=91867 OC193_RS06945 WP_048658505.1 1523964..1525388(-) (sbcB) [Vibrio crassostreae strain LMG 22240]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCAGCGAAAGATCGTCCGAG
TCAATTCGCAGGTGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAACCTTTGGTTATCTACTGCCAACCTCCTGCTG
ATTATCTTCCTGCACCTGAAGCTGCGCTGATCACTCGCATCACACCACAAAAAGCCATGTCTCAAGGCTTACCTGAGCCT
GAGTTTATCGCCAAGATTCATGCAGAGCTGGCAAAACCAAACACCACAAGCCTTGGCTACAACAGCATTCGATTCGATGA
CGAAGTAACGCGTTACACCTGTTACCGTAACTTCATCGACCCATATGCGTGGAGCTGGCAGAACGGCAACTCACGTTGGG
ATCTACTGGATGTAATGCGCGCTGTTCACGCACTGCGTCCTGAAGGCATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGTTTTAAACTGGAACACCTATCTGTGGCAAATGGCATTGAACATGAGAACGCGCACGATGCAATGGCCGATGTTATCGC
AACTATCGAACTCGCGAAAAAGCTGAAAGCCGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGCCACAAGCGTA
AGTTGAATGAGCTTGTCGACATCGTCAACATGACACCGTTAATGCACGTGTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACAAGCTGGGTGGTGCCTATGGCGTGGCATCCGACTAACCAAAACGCGGTTATTGTGGTCGACCTAGCGAAAGACCCAAG
CCCTTTACTGGAAATGGATGCGGATGAACTAAGAGAAAGGCTTTATACCAAGCGCAGCGAGCTTGCTGAAGACGAACTGC
CAGTACCAATCAAACTGGTACAACTCAACAAGTGCCCTATTCTCGCGCCAGCAAAAACGCTCACCGCTGAAAATGCTGAA
ACGATCGGTATCGATCGTCAACAGTGTTTGAAGAATCTAGCCCTATTACGTGAACATCCAGAGATTCGTGAAAAGTTGAT
TGGCTTGTACTCACAAGAGCGTGAATACGAAAAAAGCGATGATGTAGACACACACCTTTACGATGGCTTCTTCTCTCCAG
CAGATAAGACCGCGATGAACATCATTCGTGAAACTGACCCGAACAACTTGGCCGCTTTAGACATCACTTTCAGTGACGAG
CGTATTAAGCCGTTGTTGTTCCGTTACCGCGCTCGTCATTTCCCATGGACACTTGATGAAGCTGAGCAGCTGAAATGGGC
GAACCATTGTCGTGAGTTTTACGAGAGTCGCTTAGAAGAGTACATGCTGAATCTAGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.744	99.789	0.766