Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VNN47_RS06225 Genome accession   NZ_CP141709
Coordinates   1244212..1245255 (-) Length   347 a.a.
NCBI ID   WP_407350030.1    Uniprot ID   -
Organism   Lactococcus garvieae strain VC13     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239212..1250255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN47_RS06210 (VNN47_06185) rpsB 1239249..1240022 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  VNN47_RS06215 (VNN47_06190) - 1240295..1241335 (+) 1041 WP_074751412.1 lactonase family protein -
  VNN47_RS06220 (VNN47_06195) adhE 1241489..1244182 (+) 2694 WP_407350029.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  VNN47_RS06225 (VNN47_06200) sepM 1244212..1245255 (-) 1044 WP_407350030.1 SepM family pheromone-processing serine protease Regulator
  VNN47_RS06230 (VNN47_06205) coaD 1245245..1245742 (-) 498 WP_074751406.1 pantetheine-phosphate adenylyltransferase -
  VNN47_RS06235 (VNN47_06210) rsmD 1245732..1246271 (-) 540 WP_014025494.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VNN47_RS06240 (VNN47_06215) - 1246366..1247712 (-) 1347 WP_074751404.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37848.16 Da        Isoelectric Point: 6.9823

>NTDB_id=918661 VNN47_RS06225 WP_407350030.1 1244212..1245255(-) (sepM) [Lactococcus garvieae strain VC13]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTDMIDYVSQQKVGDEVTIKYTRMDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=918661 VNN47_RS06225 WP_407350030.1 1244212..1245255(-) (sepM) [Lactococcus garvieae strain VC13]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTATTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAATCAGATGGTTGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTACGGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAAAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATCACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGTCACACTTTCAAATCTTCAACTGATATGATTGACTATGTGTCTCAACAAAAAGTTGGAGATGAGGTGACCAT
CAAGTACACACGGATGGATGGCAGCAACCATGAAGCCACAGGCAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCCGGAAGTATTGGCGGGCCAAGT
GCTGGGATGATGTTTACCTTGGAGATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGTGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGCG
CTAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGGCTTCTGGTACAACAAATAACTATACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.991

100

0.49