Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OC193_RS06875 Genome accession   NZ_AP025476
Coordinates   1509726..1510907 (-) Length   393 a.a.
NCBI ID   WP_048664854.1    Uniprot ID   -
Organism   Vibrio crassostreae strain LMG 22240     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504726..1515907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS06865 - 1505344..1507113 (+) 1770 WP_048664852.1 ABC-F family ATP-binding cassette domain-containing protein -
  OC193_RS06870 - 1507527..1509575 (+) 2049 WP_048664853.1 response regulator -
  OC193_RS06875 cqsA 1509726..1510907 (-) 1182 WP_048664854.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OC193_RS06880 - 1511166..1512554 (-) 1389 WP_048664855.1 PLP-dependent aminotransferase family protein -
  OC193_RS06885 - 1512658..1513554 (+) 897 WP_048658495.1 EamA family transporter -
  OC193_RS06890 - 1513743..1514753 (-) 1011 WP_048664856.1 GTP-binding protein -
  OC193_RS06895 - 1514743..1515303 (-) 561 WP_048664857.1 carbonate dehydratase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43674.72 Da        Isoelectric Point: 6.4459

>NTDB_id=91866 OC193_RS06875 WP_048664854.1 1509726..1510907(-) (cqsA) [Vibrio crassostreae strain LMG 22240]
MSDKTKNKTLPSFIEERLSFYIQDLITQNQSQKHLVLGKRPSRDSVVMQSNDYLSLSHNKAIQQAHQAAISDHDDNVVMS
AIFLQDAESKPAFETELANYVGMETCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAAAHPFMHNNMS
HLRKQLGRHGSGVIVVDSIYSTIGTIAPLRDIYEMAQEFDCAVIVDESHSLGTHGEKGAGLVQALGLTDQVDFITVSLAK
TFAYRAGAILGPKQLSDTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRQALFKRAQSLITGLKRIGFNIRSESQ
IVSLECGNERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=91866 OC193_RS06875 WP_048664854.1 1509726..1510907(-) (cqsA) [Vibrio crassostreae strain LMG 22240]
ATGAGTGATAAAACCAAAAACAAAACATTACCTTCCTTTATTGAAGAACGCTTGAGCTTCTATATTCAAGACCTAATCAC
CCAGAACCAAAGCCAAAAACACTTGGTGTTGGGTAAACGTCCATCGCGCGACTCCGTTGTCATGCAGAGCAATGATTATT
TGTCTTTGTCACATAACAAAGCAATCCAACAAGCTCACCAAGCGGCGATCAGCGACCACGACGACAATGTGGTAATGTCT
GCGATTTTCTTACAAGATGCAGAGTCTAAACCTGCGTTTGAAACCGAACTCGCCAACTATGTTGGAATGGAAACCTGCCT
GCTTTCTCAGTCTGGTTGGGCAGCCAATATTGGGTTGCTTCAAACGATCTGTCCGCCAAATACGCCGGTGTATATCGACT
TCTTTGCACATATGTCGCTATGGGAAGGTATTCGCGCAGCAGGCGCGGCAGCTCATCCATTTATGCATAACAATATGAGT
CACTTACGTAAGCAACTGGGACGTCATGGTTCTGGTGTGATTGTTGTCGACTCGATTTACAGCACCATTGGTACCATTGC
CCCGCTCCGCGACATCTACGAAATGGCGCAAGAGTTTGATTGCGCTGTTATCGTCGATGAATCGCACTCATTAGGGACAC
ACGGTGAAAAAGGTGCAGGCTTAGTGCAAGCTCTCGGGCTCACTGACCAAGTCGACTTTATCACGGTCAGCTTAGCCAAA
ACCTTCGCTTATCGTGCAGGCGCGATCCTTGGGCCCAAACAGCTCTCTGATACTTTGCCGTTTGTTGCTTATCCTGCCAT
TTTTAGCTCAACCGTATTGCCGCAAGAAGTGATTCGTTTAGAGAAAACATTGGAGGTGATTAAAGGTGCAGATGACAAAC
GACAAGCCCTGTTTAAGCGAGCACAGTCGCTCATTACGGGTCTAAAACGGATTGGCTTTAACATCCGTAGTGAATCTCAA
ATCGTCTCGCTAGAGTGTGGTAATGAAAGAAATACAGAGCGAGTGCGCGATTTCCTTGAAGAACGTGATGTGTTCGGTGC
AGTGTTCTGCCGCCCAGCGACAGGGAAGAATAAGAACATCATCCGATTTTCAGTGAATGCCGACATGACTCCACGAGACA
TTGACCATGTGCTCACGGTTTGTCATGAGGCGTACCATCACCCAGAGTTAGAATTCGTATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.397

97.455

0.55

Multiple sequence alignment