Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VNN37_RS04520 Genome accession   NZ_CP141707
Coordinates   881558..882601 (+) Length   347 a.a.
NCBI ID   WP_003133153.1    Uniprot ID   A0AA46TVQ7
Organism   Lactococcus garvieae strain M21102102     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 876558..887601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN37_RS04505 (VNN37_04505) - 879101..880447 (+) 1347 WP_003133148.1 glucose-6-phosphate isomerase -
  VNN37_RS04510 (VNN37_04510) rsmD 880542..881081 (+) 540 WP_339000777.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VNN37_RS04515 (VNN37_04515) coaD 881071..881568 (+) 498 WP_339000779.1 pantetheine-phosphate adenylyltransferase -
  VNN37_RS04520 (VNN37_04520) sepM 881558..882601 (+) 1044 WP_003133153.1 SepM family pheromone-processing serine protease Regulator
  VNN37_RS04525 (VNN37_04525) adhE 882632..885325 (-) 2694 WP_074751410.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  VNN37_RS04530 (VNN37_04530) - 885480..886520 (-) 1041 WP_014025490.1 lactonase family protein -
  VNN37_RS04535 (VNN37_04535) rpsB 886793..887566 (+) 774 WP_003133158.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37816.10 Da        Isoelectric Point: 6.9825

>NTDB_id=918633 VNN37_RS04520 WP_003133153.1 881558..882601(+) (sepM) [Lactococcus garvieae strain M21102102]
MKNEKIKKHKKLKLFFGIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDEVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=918633 VNN37_RS04520 WP_003133153.1 881558..882601(+) (sepM) [Lactococcus garvieae strain M21102102]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGGTATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTGTTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAATCAGATGGTAGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTACGGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACCAATCAGCAATTTGATTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAGAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATCACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGCCACACTTTCAAATCTTCAACTGAGATGATTGACTATGTGTCTCAACAAAAAGTGGGAGATGAGGTGACTAT
CAAGTACACACGGGTGGATGGCAGCAACCATGAAGCCACAGGCAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GCATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAGATCGATGCCGGAAGTATTGGCGGGCCAAGT
GCTGGGATGATGTTTACTTTGGAGATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGGAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGGCTTCTGGTACAACAAATAACTACACAGATGCACTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

49.568

100

0.496