Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABVF24_RS14015 Genome accession   NZ_CP160468
Coordinates   2888346..2888975 (-) Length   209 a.a.
NCBI ID   WP_000839146.1    Uniprot ID   -
Organism   Escherichia coli strain PEC1009     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2883346..2893975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF24_RS14000 (ABVF24_13995) helD 2883588..2885642 (-) 2055 WP_001295354.1 DNA helicase IV -
  ABVF24_RS14005 (ABVF24_14000) yccF 2885765..2886211 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABVF24_RS14010 (ABVF24_14005) yccS 2886221..2888383 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ABVF24_RS14015 (ABVF24_14010) sxy/tfoX 2888346..2888975 (-) 630 WP_000839146.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABVF24_RS14020 (ABVF24_14015) sulA 2889194..2889703 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABVF24_RS14025 (ABVF24_14020) ompA 2890060..2891112 (+) 1053 WP_001307702.1 porin OmpA -
  ABVF24_RS14030 (ABVF24_14025) matP 2891188..2891640 (-) 453 WP_000877162.1 macrodomain Ter protein MatP -
  ABVF24_RS14035 (ABVF24_14030) ycbZ 2891826..2893586 (+) 1761 WP_000156471.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24157.05 Da        Isoelectric Point: 9.2180

>NTDB_id=918580 ABVF24_RS14015 WP_000839146.1 2888346..2888975(-) (sxy/tfoX) [Escherichia coli strain PEC1009]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMPFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=918580 ABVF24_RS14015 WP_000839146.1 2888346..2888975(-) (sxy/tfoX) [Escherichia coli strain PEC1009]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGCCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995