Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VNN32_RS03340 Genome accession   NZ_CP141703
Coordinates   631517..632560 (-) Length   347 a.a.
NCBI ID   WP_338976292.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-74 AL-1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 626517..637560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN32_RS03325 (VNN32_03325) rpsB 626550..627323 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  VNN32_RS03330 (VNN32_03330) - 627596..628636 (+) 1041 WP_019291938.1 lactonase family protein -
  VNN32_RS03335 (VNN32_03335) adhE 628792..631485 (+) 2694 WP_019335773.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  VNN32_RS03340 (VNN32_03340) sepM 631517..632560 (-) 1044 WP_338976292.1 SepM family pheromone-processing serine protease Regulator
  VNN32_RS03345 (VNN32_03345) coaD 632550..633047 (-) 498 WP_019335771.1 pantetheine-phosphate adenylyltransferase -
  VNN32_RS03350 (VNN32_03350) rsmD 633037..633576 (-) 540 WP_019293304.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VNN32_RS03355 (VNN32_03355) - 633675..635021 (-) 1347 WP_046401021.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37887.23 Da        Isoelectric Point: 7.9913

>NTDB_id=918571 VNN32_RS03340 WP_338976292.1 631517..632560(-) (sepM) [Lactococcus petauri strain R21-74 AL-1]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPRGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNQQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDSVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=918571 VNN32_RS03340 WP_338976292.1 631517..632560(-) (sepM) [Lactococcus petauri strain R21-74 AL-1]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGCTACCGCTTCTTATTGTAGTGGG
TTTATTCTTCCCCTTACCTTACTATATCGAGCAGCCACGAGGAACCATTCCAGTTAACCAAATGGTTGATGTTGCAGGGA
AAAAAGACGAACATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGCGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTGTTGTGAGTAGTGAAGAGATGACGGGTGGAATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTTTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCAACCTTTAAAAATGACTTACAACTTTCAGATACGATAACGGCA
GTTAATGGACATACTTTCAAATCTTCAACTGAGATGATTGATTATGTATCGCAACAAAAAGTTGGGGATAGCGTTACCAT
CAAATATACACGTGTGGATGGCAGTAATCATGAAGCCACAGGTAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACCCAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCTGGAAGTATTGGCGGGCCAAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAGGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGTAATGCGGGCG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATTGTACCTGTAAAGACGATTCAAGATGCGCTAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.703

100

0.487