Detailed information NTG0918562

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VNN32_RS01580
• Genome accession: NZ_CP141703
• Coordinates: 301381..303627 (-)
• Length: 748 a.a.
• NCBI ID: WP_046401345.1
• Uniprot ID: -
• Organism: Lactococcus petauri strain R21-74 AL-1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 296381..308627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN32_RS01555 (VNN32_01555)	fabZ	296711..297169 (+)	459	WP_003134189.1	3-hydroxyacyl-ACP dehydratase FabZ	-
VNN32_RS01560 (VNN32_01560)	uvrB	297196..299184 (-)	1989	WP_338976100.1	excinuclease ABC subunit UvrB	-
VNN32_RS01565 (VNN32_01565)	-	299181..299636 (-)	456	WP_017370530.1	RNA pyrophosphohydrolase	-
VNN32_RS01570 (VNN32_01570)	def	299741..300367 (+)	627	WP_017370260.1	peptide deformylase	-
VNN32_RS01575 (VNN32_01575)	yqeK	300739..301326 (-)	588	WP_017370528.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
VNN32_RS01580 (VNN32_01580)	clpC	301381..303627 (-)	2247	WP_046401345.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
VNN32_RS01585 (VNN32_01585)	rpoD	303845..304969 (-)	1125	WP_306723678.1	RNA polymerase sigma factor RpoD	-
VNN32_RS01590 (VNN32_01590)	-	305084..305242 (-)	159	Protein_315	translation initiation factor IF-2 N-terminal domain-containing protein	-
VNN32_RS01595 (VNN32_01595)	dnaG	305263..307149 (-)	1887	WP_338976104.1	DNA primase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 83359.32 Da
• Isoelectric Point: 4.7434

>NTDB_id=918562 VNN32_RS01580 WP_046401345.1 301381..303627(-) (clpC) [Lactococcus petauri strain R21-74 AL-1]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGSQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILSAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEAQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVKGTADTSDTEDEEK

Nucleotide

• Length: 2247 bp

>NTDB_id=918562 VNN32_RS01580 WP_046401345.1 301381..303627(-) (clpC) [Lactococcus petauri strain R21-74 AL-1]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TTTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGATGATCCTTTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGTCGGACAATGACACCTCCA
ACACAAGCGGGTGGTCGAGGCCCAGGAGGTCCACAAAATCCTCGTGGAAGTCAAGCACCTAAAGGACTTCTTGAAGAATT
CGGAGTCAACATTACTGATGCTGCACGTCGTGGAGAAATAGATCCTGTTATTGGACGGGATTCTGAAATTACCCGTGTTA
TCGAAATTTTGAATCGTCGAACAAAAAATAATCCTGTTCTTATCGGTGAACCTGGTGTTGGGAAAACAGCAGTTGTTGAA
GGTTTAGCCCAAAAAATAGTTGATGGTGATGTACCACAAAAACTACAAAATAAAGAAGTTATTCGTCTTGATGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGGCAATTTGAAGAGCGTATGCAAAAACTGATGGAAGAGATTCGTAAACGTGATG
ACGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGCTCTGCTGGGGAAGGAAATATGGATGCTGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGAGAACTCCAACTTGTTGGAGCAACAACCCTCAATGAATATCGAATTATTGAAAA
AGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACTATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCAGATGAAGCAATCTTATCTGCTGCAAATCTGTCTAAC
CGTTATATTCAGGACCGTTTCCTTCCCGATAAAGCAATAGACTTGCTGGACGAAGCGGGTTCGAAAAAGAATCTGACCCT
CAAATTTGTTGATCCTGAGGACATAAAGAAACGTATTGAGCAAGCAGAGGCGCAAAAAAACGAAGCCATGCAACGTGAAG
ATTTTGAGAAAGCAGCTCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTTCAAAGCCATGAAATCTCAGATACTGAC
ATGCCAAATATCACAGAAAAAGATATTGAAGCAATTGTTGAAGAAAAGACACATATACCTGTAGGTGATTTGAAAGAAAA
AGAACAAACACAGCTCATTAATCTAGCTGAAGACTTGAAAGAACATGTTATCGGGCAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCGCGTGTCGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCTACT
GGTGTAGGGAAGACCGAACTTGCAAAACAATTGGCTTATGAGCTTTTTGGCTCAAGAGATAGCATGATTCGCTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCTCCTCCAGGATATGTGGGTTATGAAGAAGCAGGTC
AGTTGACAGAACGTGTGCGCCGTAACCCATACAGCTTAATTTTATTGGATGAGATTGAGAAAGCTCACCCGGATGTAATG
CATATGTTCTTGCAAATTCTTGATGACGGGCGTTTGACAGATGCGCAAGGTCGTACAGTTTCCTTCAAAGATGCTATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGCGCTGCACGTGAAGGACGTACGAATT
CAGTGCTTGGAGAGTTGGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCAGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTAGATTTAATGTTGGATGAAGTAAATGCTCAAATCGCTCAAAATGATATTCATCT
TGACGTCACACAGGCGGTTAAAGAAAAACTCGTTGATCTGGGCTACGATCCGAAAATGGGAGCACGCCCATTACGTCGTA
CCATCCAGGATAATATCGAGGATGCTATTGCTGATTTTTATATCGAGCATCCTGAGTATAAAGAATTACTTGCAGATTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAAGGCACAGCGGATACATCTGATACTGAAGATGAGGA
GAAATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (284-383)

• ATPase family associated with various cellular activities (AAA) (AAA) (146-259)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (640-710)

• AAA domain (Cdc48 subfamily) (AAA_2) (469-634)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	86.364	100	0.864
clpE	Streptococcus mutans UA159	77.483	100	0.782
clpE	Streptococcus pneumoniae TIGR4	77.565	97.727	0.758
clpE	Streptococcus pneumoniae Rx1	77.565	97.727	0.758
clpE	Streptococcus pneumoniae D39	77.565	97.727	0.758
clpE	Streptococcus pneumoniae R6	77.565	97.727	0.758
clpC	Bacillus subtilis subsp. subtilis str. 168	51.944	85.963	0.447
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.961	81.952	0.393
clpC	Streptococcus pneumoniae Rx1	46.935	82.888	0.389
clpC	Streptococcus pneumoniae D39	46.935	82.888	0.389
clpC	Streptococcus pneumoniae TIGR4	46.774	82.888	0.388
clpC	Streptococcus mutans UA159	46.44	82.62	0.384
clpC	Streptococcus thermophilus LMD-9	45.645	82.888	0.378
clpC	Streptococcus thermophilus LMG 18311	45.484	82.888	0.377